Job Description P09030 Confidence 100.00% Date Thu Jan 5 11:01:48 GMT 2012 Rank 7 Aligned Residues 251 % Identity 24% Template c1e9nB_ PDB info PDB header:dna repair Chain: B: PDB Molecule:dna-(apurinic or apyrimidinic site) lyase; PDBTitle: a second divalent metal ion in the active site of a new2 crystal form of human apurinic/apyrimidinic endonuclease,3 ape1, and its implications for the catalytic mechanism Resolution 2.2 Å

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		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.		.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.			.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.
Predicted Secondary structure																			.																																							.	.
Query SS confidence																			.																																							.	.
Query Sequence		M	K	F	V	S	F	N	I	N	G	L	R	A	R	P	H	Q	.	L	E	A	I	V	E	K	H	Q	P	D	V	I	G	L	Q	E	T	K	V	H	D	D	M	F	P	L	E	E	V	A	K	L	G	Y	N	V	F	.	.	Y	H	G	Q	K	G	H	Y	G	V	A	L	L	T	K	E	T	P	I	A	V	R
Query Conservation																			.																																							.	.
Alig confidence																			.																																							.	.
Template Conservation
Template Sequence		L	K	I	C	S	W	N	V	D	G	L	R	A	W	I	K	K	K	G	L	D	W	V	K	E	E	A	P	D	I	L	C	L	Q	E	T	K	C	S	E	N	K	L	P	A	E	L	Q	E	L	P	G	L	S	H	Q	Y	W	S	A	P	S	E	G	Y	S	G	V	G	L	L	S	R	Q	C	P	L	K	V	S
Template Known Secondary structure										S	S							T	T											S											S	S	S			G	G	G	T	T		T	T													S								S	S			S
Template Predicted Secondary structure
Template SS confidence
		62	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.
		78	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		R	G	F	P	G	D	D	E	E	A	Q	R	R	I	I	M	A	E	I	P	S	L	L	G	N	V	T	V	I	N	G	Y	F	P	Q	G	E	S	R	D	H	P	I	K	F	P	A	K	A	Q	F	Y	Q	N	L	Q	N	Y	L	E	T	E	L	K	R	D	N	P	V	L	I	M	G	D	M	N	I	S	P	T
Query Conservation
Alig confidence																					.	.	.	.																										.	.	.
Template Conservation																					.	.	.	.																										.	.	.
Template Sequence		Y	G	I	G	D	E	E	H	D	Q	E	G	R	V	I	V	A	E	F	.	.	.	.	D	S	F	V	L	V	T	A	Y	V	P	N	A	G	R	G	L	V	R	L	E	Y	R	Q	R	.	.	.	W	D	E	A	F	R	K	F	L	K	G	L	A	S	R	K	P	L	V	L	C	G	D	L	N	V	A	H	E
Template Known Secondary structure			S		S		G	G	G	S	S	S									.	.	.	.	S	S													G	G	G	T	T							.	.	.																S									S				S
Template Predicted Secondary structure																					.	.	.	.																										.	.	.
Template SS confidence
		144	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.					.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.				.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.
		158	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		D	L	D	I	G	I	G	E	E	N	R	K	R	W	L	R	T	G	K	C	S	F	L	P	E	E	R	E	W	M	D	R	L	M	S	W	G	L	V	D	T	F	R	H	A	N	P	Q	T	A	D	R	F	S	W	F	D	Y	R	S	K	G	F	D	D	N	R	G	L	R	I	D	L	L	L	A	S	Q	P	L
Query Conservation
Alig confidence							.	.	.	.	.
Template Conservation							.	.	.	.	.
Template Sequence		E	I	D	L	R	.	.	.	.	.	N	P	K	G	N	K	K	N	A	G	F	T	P	Q	E	R	Q	G	F	G	E	L	L	Q	A	V	P	L	A	D	S	F	R	H	L	Y	P	N	T	P	Y	A	Y	T	F	W	T	Y	M	M	N	A	R	S	K	N	V	G	W	R	L	D	Y	F	L	L	S	H	S	L
Template Known Secondary structure		G	G	G	B	S	.	.	.	.	.		S	G	G	G	T	T	S	T	T	S															T	T										T	T			S			S				T	G	G	G	T	T	T	T	T												G	G	G
Template Predicted Secondary structure							.	.	.	.	.
Template SS confidence
		217	.	.	220	.						.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.
		238	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	E	C	C	V	E	T	G	I	D	Y	E	I	R	S	M	E	K	P	S	D	H	A	P	V	W	A	T	F	R
Query Conservation
Alig confidence																	.	.	.	.
Template Conservation																	.	.	.	.
Template Sequence		L	P	A	L	C	D	S	K	I	R	S	K	A	L	G	.	.	.	.	S	D	H	C	P	I	T	L	Y	L	A
Template Known Secondary structure		G	G	G								T	T			S	.	.	.	.	S	S	B
Template Predicted Secondary structure																	.	.	.	.
Template SS confidence
		292	.	.	.	.	.	.	.	300	.	.	.	.	.	.					.	.	.	310	.	.	.	.	.	.	.

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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