Job Description P0AD27 Confidence 100.00% Date Wed Jan 25 15:20:24 GMT 2012 Rank 11 Aligned Residues 345 % Identity 15% Template c2w5tA_ PDB info PDB header:transferase Chain: A: PDB Molecule:processed glycerol phosphate lipoteichoic acid PDBTitle: structure-based mechanism of lipoteichoic acid synthesis by2 staphylococcus aureus ltas. Resolution 1.60 Å

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		232	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.							.	280	.	.	.	.	.	.	.	.	.				290	.	.	.	.	.	.	.	.	.	300	.	.
Predicted Secondary structure																																																	.	.	.	.	.	.												.	.	.
Query SS confidence																																																	.	.	.	.	.	.												.	.	.
Query Sequence		R	L	I	E	Q	G	N	P	D	A	V	S	V	Q	Y	P	L	S	E	L	R	Y	R	D	M	G	T	G	Q	N	V	L	L	I	T	V	D	G	L	N	Y	S	R	F	E	K	Q	.	.	.	.	.	.	M	P	A	L	A	G	F	A	E	Q	N	.	.	.	I	S	F	T	R	H	M	S	S	G	N	T	T
Query Conservation																																																	.	.	.	.	.	.												.	.	.
Alig confidence																																																	.	.	.	.	.	.												.	.	.
Template Conservation
Template Sequence		E	D	D	L	T	K	V	L	N	Y	T	K	Q	R	Q	T	E	P	N	P	E	Y	Y	G	V	A	K	K	K	N	I	I	K	I	H	L	E	S	F	Q	T	F	L	I	N	K	K	V	N	G	K	E	V	T	P	F	L	N	K	L	S	S	G	K	E	Q	F	T	Y	F	P	N	F	F	H	Q	T	G	Q	G
Template Known Secondary structure												T	S	T	T						T	T	T	T	T	T	T	T	T									T	T			G	G	G	T	T				T	T			S	S								T	T		S	S					T	T							T	T
Template Predicted Secondary structure
Template SS confidence
		219	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.
		303	.	.	.	.			.	.	310	.	.	.	.	.	.	.	.	.	320	.				.	.	.	.	.	.	.	.	330	.	.	.	.		.	.	.	.	.	340	.	.	.	.	.	.	.															.	.	350	.	.	.	.	.	.	.	.	.	360	.	.
Predicted Secondary structure							.	.															.	.	.														.														.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence							.	.															.	.	.														.														.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		D	N	G	I	F	.	.	G	L	F	Y	G	I	S	P	S	Y	M	D	G	I	.	.	.	L	S	T	R	T	P	A	A	L	I	T	A	L	.	N	Q	Q	G	Y	Q	L	G	L	F	S	S	D	.	.	.	.	.	.	.	.	.	.	.	.	.	.	G	F	T	S	P	L	Y	R	Q	A	L	L	S	D	F
Query Conservation							.	.															.	.	.														.														.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence							.	.															.	.	.														.														.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		K	T	S	D	S	E	F	T	M	D	N	S	L	Y	G	L	P	Q	G	S	A	F	S	L	K	G	D	N	T	Y	Q	S	L	P	A	I	L	D	Q	K	Q	G	Y	K	S	D	V	M	H	G	D	Y	K	T	F	W	N	R	D	Q	V	Y	K	H	F	G	I	D	K	F	Y	D	A	T	Y	Y	D	M	S	D
Template Known Secondary structure		T											S					S	S	S						S	T	T	S																						S	S		T	T	G	G	G									T							G	G	G	S				G
Template Predicted Secondary structure
Template SS confidence
		299	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.
		363	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.													.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430
Predicted Secondary structure																																																				.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																																				.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		S	M	P	S	V	R	T	Q	S	D	E	Q	T	A	T	Q	W	I	N	W	L	G	R	Y	A	Q	E	D	N	R	W	F	S	W	V	S	F	N	G	T	N	I	D	D	S	N	Q	Q	A	F	.	.	.	.	.	.	.	.	.	.	.	.	A	R	K	Y	S	R	A	A	G	N	V	D	D	Q	I	N	R	V
Query Conservation																																																				.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																								.	.	.																										.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																								.	.	.
Template Sequence		K	N	V	V	N	L	G	L	K	D	K	I	F	F	K	D	S	A	N	Y	Q	A	.	.	.	K	M	K	S	P	F	Y	S	H	L	I	T	L	T	N	H	Y	P	F	T	L	D	E	K	D	A	T	I	E	K	S	N	T	G	D	A	T	V	D	G	Y	I	Q	T	A	R	Y	L	D	E	A	L	E	E	Y
Template Known Secondary structure		G	G			T	T																	.	.	.	T	S		S	S									S	S		T	T					G	G	G			S					S	S
Template Predicted Secondary structure																								.	.	.
Template SS confidence
		379	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400				.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.
		431	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.											460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500
Predicted Secondary structure																															.	.	.	.	.	.	.	.	.	.
Query SS confidence																															.	.	.	.	.	.	.	.	.	.
Query Sequence		L	N	A	L	R	D	S	G	K	L	D	N	T	V	V	I	I	T	A	G	R	G	I	P	L	S	E	E	E	.	.	.	.	.	.	.	.	.	.	E	T	F	D	W	S	H	G	H	L	Q	V	P	L	V	I	H	W	P	G	T	P	A	Q	R	I	N	A	L	T	D	H	T	D	L	M	T	T	L	M	Q
Query Conservation																															.	.	.	.	.	.	.	.	.	.
Alig confidence																															.	.	.	.	.	.	.	.	.	.																																									.
Template Conservation																																																																																	.
Template Sequence		I	N	D	L	K	K	K	G	L	Y	D	N	S	V	I	M	I	Y	G	D	H	Y	G	I	S	E	N	H	N	N	A	M	E	K	L	L	G	E	K	I	T	P	A	K	F	T	D	L	N	R	T	G	F	W	I	K	I	P	G	K	S	G	G	I	N	N	E	Y	A	G	Q	V	D	V	M	P	T	I	L	.
Template Known Secondary structure									T		S	T	T	S								S		S	S		G	G	G									T	S										T	T	B								T	T												G	G	G							.
Template Predicted Secondary structure																																																																																	.
Template SS confidence
		456	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.
		501	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.	.	.	.	.	540	.	.	.	.	.	.	.	.	.	550	.	.	.	.	.	.	.	.	.	560	.	.	.	.	.	.	.	.	.	570	.	.	.	.	.	.	.	.	.	580
Predicted Secondary structure
Query SS confidence
Query Sequence		R	L	L	H	V	S	T	P	A	S	E	Y	S	Q	G	Q	D	L	F	N	P	Q	R	R	H	Y	W	V	T	A	A	D	N	D	T	L	A	I	T	T	P	K	K	T	L	V	L	N	N	N	G	K	Y	R	T	Y	N	L	R	G	E	R	V	K	D	E	K	P	Q	L	S	L	L	L	Q	V	L	T	D	E
Query Conservation
Alig confidence										.																					.	.	.	.
Template Conservation										.																					.	.	.	.
Template Sequence		H	L	A	G	I	D	T	K	.	N	Y	L	M	F	G	T	D	L	F	S	K	G	H	N	Q	V	V	P	F	.	.	.	.	R	N	G	D	F	I	T	K	D	Y	K	Y	V	N	G	K	I	Y	S	N	K	N	N	E	L	I	T	T	Q	P	A	D	F	E	K	N	K	K	Q	V	E	K	D	L	E	M	S
Template Known Secondary structure					T				T	.	T	S			S				T	T	S	T	T								.	.	.	.	T	T	S					S	S					T	T					T	T	T			B			S			T	T
Template Predicted Secondary structure										.																					.	.	.	.
Template SS confidence
		535	.	.	.	.	540	.	.		.	.	.	.	.	.	.	550	.	.	.	.	.	.	.	.	.	560	.	.					.	.	.	.	.	.	.	570	.	.	.	.	.	.	.	.	.	580	.	.	.	.	.	.	.	.	.	590	.	.	.	.	.	.	.	.	.	600	.	.	.	.	.	.	.	.	.
		581	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		K	R	F	I	A
Query Conservation
Alig confidence
Template Conservation
Template Sequence		D	N	V	L	N
Template Known Secondary structure
Template Predicted Secondary structure
Template SS confidence
		610	.	.	.	.

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions