Job Description P31448 Confidence 98.16% Date Thu Jan 5 11:47:39 GMT 2012 Rank 5 Aligned Residues 402 % Identity 8% Template c3lrcC_ PDB info PDB header:transport protein Chain: C: PDB Molecule:arginine/agmatine antiporter; PDBTitle: structure of e. coli adic (p1) Resolution 4.00 Å

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100		.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.
Predicted Secondary structure																																																															.
Query SS confidence																																																															.
Query Sequence		R	S	L	K	A	P	V	I	A	A	S	L	M	L	T	N	L	S	T	E	Q	L	V	G	L	S	G	Q	A	Y	K	S	G	M	S	V	M	G	W	E	V	T	S	A	V	T	L	I	F	L	A	L	I	F	L	P	R	Y	L	K	R	.	G	I	A	T	I	P	D	F	L	E	E	R	Y	D	K	T	T	R
Query Conservation																																																															.
Alig confidence																					.																																										.
Template Conservation																					.
Template Sequence		H	K	V	G	L	I	P	V	T	L	M	V	S	G	N	I	M	G	S	.	G	V	F	L	L	P	A	N	L	A	S	T	G	G	I	A	I	Y	G	W	L	V	T	I	I	G	A	L	G	L	S	M	V	Y	A	K	M	S	F	L	D	P	S	P	G	G	S	Y	A	Y	A	R	R	C	F	G	P	F	L	G
Template Known Secondary structure		S	S													T	T	S	S	S	.	S	T	T	T					T	T	S	S					S																						T	T				S	S		T	T	T	G	G	G	G	T	T
Template Predicted Secondary structure																					.
Template SS confidence
		8	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.		.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.
		119	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		I	I	I	D	F	C	F	L	I	A	T	G	V	C	F	L	P	I	V	L	Y	S	G	A	L	A	L	N	S	L	F	H	V	G	E	S	L	Q	I	S	H	G	A	A	I	W	L	L	V	I	L	L	G	L	A	G	I	L	Y	A	V	I	G	G	L	R	A	M	A	V	A	D	S	I	N	G	I	G	L	V
Query Conservation
Alig confidence																											.	.	.	.	.	.	.
Template Conservation																											.	.	.	.	.	.	.
Template Sequence		Y	Q	T	N	V	L	Y	W	L	A	C	W	I	G	N	I	A	M	V	V	I	G	V	G	Y	.	.	.	.	.	.	.	L	S	Y	F	F	P	I	L	K	D	P	L	V	L	T	I	T	C	V	V	V	L	W	I	F	V	L	L	N	I	V	G	P	K	M	I	T	R	V	Q	A	V	A	T	V	L	A	L
Template Known Secondary structure										T	T	T	T											T	G	G	.	.	.	.	.	.	.	G	S	S	S	S					S	S	S																			S		S
Template Predicted Secondary structure																											.	.	.	.	.	.	.
Template SS confidence
		87	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.								.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.
		199	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		I	G	G	L	M	V	P	V	F	G	L	I	A	M	G	K	G	S	F	M	Q	G	I	E	Q	L	T	T	V	H	A	E	K	L	N	S	I	G	G	P	T	D	P	L	P	I	G	A	A	F	T	G	L	I	L	V	N	T	F	Y	W	C	T	N	Q	G	I	V	Q	R	T	L	A	S	K	S	L	A	E	G
Query Conservation
Alig confidence																								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		I	P	I	V	G	I	A	V	F	G	W	F	W	F	R	G	E	T	Y	M	A	A	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	W	N	V	S	G	L	G	T	F	G	A	I	Q	S	T	L	N	V	T	L	W	S	F	I	G	V	E	S	A	S	V	A	A	G	V	V	K	N	P	K	R	N	V
Template Known Secondary structure														S			S	S						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.		S		S	S	S						T								S	T	T		T	T	G	G	G					G	G	G	S	S	S
Template Predicted Secondary structure																								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.																.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.
		279	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.
Predicted Secondary structure																																																																																	.
Query SS confidence																																																																																	.
Query Sequence		Q	K	G	A	L	L	T	A	V	L	K	M	L	D	P	L	V	L	V	L	P	G	L	I	A	F	H	L	Y	Q	D	L	P	K	A	D	M	A	Y	P	T	L	V	N	N	V	L	P	V	P	M	V	G	F	F	G	A	V	L	F	G	A	V	I	S	T	F	N	G	F	L	N	S	A	S	T	L	F	S	.
Query Conservation																																																																																	.
Alig confidence																										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																			.
Template Conservation																										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		P	I	A	T	I	G	G	V	L	I	A	A	V	C	Y	V	L	S	T	T	A	I	M	G	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	M	I	P	N	T	A	G	A	I	V	S	F	C	A	A	A	G	C	L	G	S	L	G	G	W	T	L	L	A	G	Q	T	A	K	A
Template Known Secondary structure																				T	T				S	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.						T										T																T	T	S	S
Template Predicted Secondary structure																										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		225	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.																						.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.
				358	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.
Predicted Secondary structure		.	.
Query SS confidence		.	.
Query Sequence		.	.	M	G	I	Y	R	R	I	I	N	Q	N	A	E	P	Q	Q	L	V	T	V	G	R	K	F	G	F	F	I	A	I	V	S	V	L	V	A	P	W	I	A	N	A	P	Q	G	L	Y	S	W	M	K	Q	L	N	G	I	Y	N	V	P	L	V	T	I	I	I	M	G	F	F	F	P	R	I	P	A	L	A
Query Conservation		.	.
Alig confidence		.	.
Template Conservation
Template Sequence		A	A	D	D	G	L	F	P	P	I	F	A	R	V	N	K	A	G	T	P	V	A	G	L	I	I	V	G	I	L	M	T	I	F	Q	L	S	S	I	S	P	N	A	T	K	E	F	G	L	V	S	S	V	S	V	I	F	T	L	V	P	Y	L	Y	T	C	A	A	L	L	L	L	G	H	G	H	F	G	K	A
Template Known Secondary structure		T	T	T	S	S		S									S	S	S	S																	T	T	S	S	S		S	S	S	S	S			S	S	T	T						T	T													T		T	T		S	S	S
Template Predicted Secondary structure
Template SS confidence
		304	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.
		436	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	K	V	A	M	G	I	G	I	I	S	Y	I	T	I	N	Y	L	V	K	F	D	F	H	F	L	Y	V	L	A	C	T	F	C	I	N	V	V	V	M	L	V	I	G	F	I	K	P	R	A	T	P
Query Conservation
Alig confidence																									.	.
Template Conservation																									.	.
Template Sequence		R	P	A	Y	L	A	V	T	T	I	A	F	L	Y	C	I	W	A	V	V	G	S	G	.	.	A	K	E	V	M	W	S	F	V	T	L	M	V	I	T	A	M	Y	A	L	N	Y	N	R	L	H	K
Template Known Secondary structure																						S	S		.	.																	T	T	T	S						S	S
Template Predicted Secondary structure																									.	.
Template SS confidence
		384	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.			.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.