Job Description P31448 Confidence 97.67% Date Thu Jan 5 11:47:39 GMT 2012 Rank 7 Aligned Residues 403 % Identity 14% Template c2w8aC_ PDB info PDB header:membrane protein Chain: C: PDB Molecule:glycine betaine transporter betp; PDBTitle: crystal structure of the sodium-coupled glycine betaine2 symporter betp from corynebacterium glutamicum with bound3 substrate Resolution 3.35 Å

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		6	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.													.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.		.	.	.	70	.	.
Predicted Secondary structure																															.	.	.	.	.	.	.	.	.	.	.	.																																	.
Query SS confidence																															.	.	.	.	.	.	.	.	.	.	.	.																																	.
Query Sequence		I	L	S	F	V	G	F	T	L	L	V	A	V	I	T	W	W	K	V	R	K	T	D	T	G	S	Q	Q	G	.	.	.	.	.	.	.	.	.	.	.	.	Y	F	L	A	G	R	S	L	K	A	P	V	I	A	A	S	L	M	L	T	N	L	S	T	E	Q	L	V	G	L	S	G	.	Q	A	Y	K	S	G
Query Conservation																															.	.	.	.	.	.	.	.	.	.	.	.																																	.
Alig confidence																															.	.	.	.	.	.	.	.	.	.	.	.																																	.
Template Conservation
Template Sequence		I	L	F	G	T	V	F	V	F	F	I	V	V	I	A	A	S	K	F	G	T	I	R	L	G	R	I	D	E	A	P	E	F	R	T	V	S	W	I	S	X	X	F	A	A	G	X	G	I	G	L	X	F	Y	G	T	T	E	P	L	T	F	Y	R	N	G	V	P	G	H	D	E	H	N	V	G	V	A	X	S
Template Known Secondary structure																		S	G	G	G	G			S	S	S	T	T				S	S																																T			T	T	S		S	S
Template Predicted Secondary structure
Template SS confidence
		104	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.
		73	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.		.	.	.	.	100	.	.	.	.	.	.	.	.	.	110					.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.
Predicted Secondary structure																									.																.	.	.	.
Query SS confidence																									.																.	.	.	.
Query Sequence		M	S	V	M	G	W	E	V	T	S	A	V	T	L	I	F	L	A	L	I	F	L	P	.	R	Y	L	K	R	G	I	A	T	I	P	D	F	L	E	.	.	.	.	E	R	Y	D	K	T	T	R	I	I	I	D	F	C	F	L	I	A	T	G	V	C	F	L	P	I	V	L	Y	S	G	A	L	A	L	N	S
Query Conservation																									.																.	.	.	.
Alig confidence																									.																.	.	.	.																																					.
Template Conservation																																																																																	.
Template Sequence		T	T	X	F	H	W	T	L	H	P	W	A	I	Y	A	I	V	G	L	A	I	A	Y	S	T	F	R	V	G	R	K	Q	L	L	S	S	A	F	V	P	L	I	G	E	K	G	A	E	G	W	L	G	K	L	I	D	I	L	A	I	I	A	T	V	F	G	T	A	C	S	L	G	L	G	A	L	Q	I	G	.
Template Known Secondary structure								S																		T	T	T	S				S	S	G	G	G	G	G	T	T	T	S		T	T	T			S	S	S	S																												.
Template Predicted Secondary structure																																																																																	.
Template SS confidence
		184	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.
		148	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	F	H	V	G	E	S	L	Q	I	S	H	G	A	A	I	W	L	L	V	I	L	L	G	L	A	G	I	L	Y	A	V	I	G	G	L	R	A	M	A	V	A	D	S	I	N	G	I	G	L	V	I	G	G	L	M	V	P	V	F	G	L	I	A	M	G	K	G	S	F	M	Q	G	I	E	Q	L	T	T	V
Query Conservation
Alig confidence		.
Template Conservation		.
Template Sequence		.	A	G	L	S	A	A	N	I	I	E	S	D	W	T	I	V	G	I	V	S	V	L	T	L	A	F	I	F	S	A	I	S	G	V	G	K	G	I	Q	Y	L	S	N	A	N	X	V	L	A	A	L	L	A	I	F	V	F	V	V	G	P	T	V	S	I	L	N	L	L	P	G	S	I	G	N	Y	L	S	N
Template Known Secondary structure		.				T	T	T	S																			T	T	G	G	G	T	T	S			S																								S
Template Predicted Secondary structure		.
Template SS confidence
			263	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.
		228	.	230	.	.	.	.	.	.	.	.	.	240							.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.
Predicted Secondary structure															.	.	.	.	.	.
Query SS confidence															.	.	.	.	.	.
Query Sequence		H	A	E	K	L	N	S	I	G	G	P	T	D	.	.	.	.	.	.	P	L	P	I	G	A	A	F	T	G	L	I	L	V	N	T	F	Y	W	C	T	N	Q	G	I	V	Q	R	T	L	A	S	K	S	L	A	E	G	Q	K	G	A	L	L	T	A	V	L	K	M	L	D	P	L	V	L	V	L	P	G	L
Query Conservation															.	.	.	.	.	.
Alig confidence															.	.	.	.	.	.																						.	.	.																													.
Template Conservation																																										.	.	.																													.
Template Sequence		F	F	Q	X	A	G	R	T	A	X	S	A	D	G	T	A	G	E	W	L	G	S	W	T	I	F	Y	W	A	W	W	I	S	W	S	P	F	V	G	X	.	.	.	F	L	A	R	I	S	R	G	R	S	I	R	E	F	I	L	G	V	L	L	V	P	A	G	V	S	T	V	.	W	F	S	I	F	G	G	T
Template Known Secondary structure							T			T	T	T	T	S	S								T	T										T	T							.	.	.						T	T	T																					.
Template Predicted Secondary structure																																										.	.	.																													.
Template SS confidence
		344	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.				.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.		.	.	.	.	.	.	.	.
		302	.	.	.	.	.						.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.		.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.
Predicted Secondary structure								.	.	.	.	.																		.
Query SS confidence								.	.	.	.	.																		.
Query Sequence		I	A	F	H	L	Y	.	.	.	.	.	Q	D	L	P	K	A	D	M	A	Y	P	T	L	V	N	N	V	.	L	P	V	P	M	V	G	F	F	G	A	V	L	F	G	A	V	I	S	T	F	N	G	F	L	N	S	A	S	T	L	F	S	M	G	I	Y	R	R	I	I	N	Q	N	A	E	P	Q	Q	L	V
Query Conservation								.	.	.	.	.																		.
Alig confidence								.	.	.	.	.																		.																																				.	.	.	.	.	.
Template Conservation																																																																		.	.	.	.	.	.
Template Sequence		A	I	V	F	E	Q	N	G	E	S	I	W	G	D	G	A	A	E	E	Q	L	F	G	L	L	H	A	L	P	G	G	Q	I	X	G	I	I	A	X	I	L	L	G	T	F	F	I	T	S	A	D	S	A	S	T	V	X	G	T	X	S	Q	H	G	.	.	.	.	.	.	Q	L	E	A	N	K	W	V	T	A
Template Known Secondary structure									T						T	T		S										T	S	T	T																															T	T	T	T	.	.	.	.	.	.		S	S
Template Predicted Secondary structure																																																																		.	.	.	.	.	.
Template SS confidence
		420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.							.	.	.	.	.	.	490	.	.	.
		376	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		T	V	G	R	K	F	G	F	F	I	A	I	V	S	V	L	V	A	P	W	I	A	N	A	P	Q	G	L	Y	S	W	M	K	Q	L	N	G	I	Y	N	V	P	L	V	T	I	I	I	M	G	F	F
Query Conservation
Alig confidence																				.	.	.	.	.	.	.
Template Conservation																				.	.	.	.	.	.	.
Template Sequence		A	W	G	V	A	T	A	A	I	G	L	T	L	L	L	S	G	G	.	.	.	.	.	.	.	D	N	A	L	S	N	L	Q	N	V	T	I	V	A	A	T	P	F	L	F	V	V	I	G	L	X	F
Template Known Secondary structure																			G	.	.	.	.	.	.	.	G	G
Template Predicted Secondary structure																				.	.	.	.	.	.	.
Template SS confidence
		494	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.								.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.	.	.	.