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Job DescriptionP31448
Confidence2.35%DateThu Jan 5 11:47:39 GMT 2012
Rank75Aligned Residues182
% Identity11%Templatec2gfpA_
PDB info PDB header:membrane proteinChain: A: PDB Molecule:multidrug resistance protein d; PDBTitle: structure of the multidrug transporter emrd from2 escherichia coli
Resolution3.50 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   339340.........350.........360.........370.........380.........390.........400.........410........
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Query Sequence  GAVISTFNGFLNSASTLFSMGIYRRIINQNAEPQQLVTVGRKFGFFIAIVSVLVAPWIANAPQGLYSWMKQLNGIYNVPL
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Template Sequence  VQSVMGAYLLTYGVSQLFYGPISDRVGRR. . . . . . . . PVILVGMSIFMLATLVAVTTSSLTVLIAASAMQGMGTGVGGVM
Template Known Secondary structure  TTTTS


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   45....50.........60.........70... ......80.........90.........100.........110......
 
   419420.........430.........440.........450.........460.........470.........480.........490........
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Query Sequence  VTIIIMGFFFPRIPALAAKVAMGIGIISYITINYLVKFDFHFLYVLACTFCINVVVMLVIGFIKPRATPFTFKDAFAVDM
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Template Conservation                                                                                  
Template Sequence  ARTLPRDLYERTQLRHANSLLNMGILVSPLLAPLIGGLLDTMWNWRACYLFLLVLCAGVTFSMARWMPETRPVDAPRTRL
Template Known Secondary structure  TSS

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   117..120.........130.........140.........150.........160.........170.........180.........190......
 
   499500.........510.........520........
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Query Sequence  KPWKNVKIASIGILFAMIGVYAGLAEFGGY
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Template Sequence  LTSYKTLFGNSGFNCYLLMLIGGLAGIAAF
Template Known Secondary structure  TT
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   197..200.........210.........220......
 
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No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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Lawrence Kelley, Benjamin Jefferys 
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