Job Description P0ADE8 Confidence 100.00% Date Thu Jan 5 11:20:50 GMT 2012 Rank 6 Aligned Residues 306 % Identity 19% Template c1yx2B_ PDB info PDB header:transferase Chain: B: PDB Molecule:aminomethyltransferase; PDBTitle: crystal structure of the probable aminomethyltransferase2 from bacillus subtilis Resolution 2.08 Å

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		11	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90
Predicted Secondary structure
Query SS confidence
Query Sequence		P	T	A	S	A	R	L	P	L	T	L	M	T	L	D	D	W	A	L	A	T	I	T	G	A	D	S	E	K	Y	M	Q	G	Q	V	T	A	D	V	S	Q	M	A	E	D	Q	H	L	L	A	A	H	C	D	A	K	G	K	M	W	S	N	L	R	L	F	R	D	G	D	G	F	A	W	I	E	R	R	S	V
Query Conservation
Alig confidence
Template Conservation
Template Sequence		E	H	E	A	V	R	T	A	A	G	L	F	D	V	S	H	X	G	E	V	E	V	S	G	N	D	S	L	S	F	L	Q	R	L	X	T	N	D	V	S	A	L	T	P	G	R	A	Q	Y	T	A	X	C	Y	P	D	G	G	T	V	D	D	L	L	I	Y	Q	K	G	E	N	R	Y	L	L	V	I	N	A	S
Template Known Secondary structure									S							T	T	S							S	T	T									B	S	S		G	G	G			T	T										T	T	S													T	T								G	G
Template Predicted Secondary structure
Template SS confidence
		36	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.
		91	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.		.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.								.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.		160	.
Predicted Secondary structure																									.																															.	.	.	.	.	.	.																	.
Query SS confidence																									.																															.	.	.	.	.	.	.																	.
Query Sequence		R	E	P	Q	L	T	E	L	K	K	Y	A	V	F	S	K	V	T	I	A	P	D	D	.	E	R	V	L	L	G	V	A	G	F	Q	A	R	A	A	L	A	N	L	F	S	E	L	P	S	K	E	K	Q	V	.	.	.	.	.	.	.	V	K	E	G	A	T	T	L	L	W	F	E	H	P	A	E	.	R	F
Query Conservation																									.																															.	.	.	.	.	.	.																	.
Alig confidence																									.																															.	.	.	.	.	.	.																	.
Template Conservation
Template Sequence		N	I	D	K	D	L	A	W	X	K	E	H	A	A	G	D	V	Q	I	D	N	Q	S	D	Q	I	A	L	L	A	V	Q	G	P	K	A	E	A	I	L	K	N	L	T	D	A	D	V	S	A	L	K	P	F	A	F	I	D	E	A	D	I	S	G	R	K	A	L	I	S	R	T	G	Y	T	G	E	D	G	Y
Template Known Secondary structure		G														S	S							T	T	T								S	T	T										S	S			T	T			T	T	B								T	T							S			S	S	S	S
Template Predicted Secondary structure
Template SS confidence
		116	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.
		162	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.						180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.
Predicted Secondary structure																				.	.	.	.	.
Query SS confidence																				.	.	.	.	.
Query Sequence		L	I	V	T	D	E	A	T	A	N	M	L	T	D	K	L	R	G	.	.	.	.	.	E	A	E	L	N	N	S	Q	Q	W	L	A	L	N	I	E	A	G	F	P	V	I	D	A	A	N	S	G	Q	F	I	P	Q	A	T	N	L	Q	A	L	G	G	I	S	F	K	K	G	C	Y	T	G	Q	E	M	V	A
Query Conservation																				.	.	.	.	.
Alig confidence																				.	.	.	.	.																																													.
Template Conservation																																																																					.
Template Sequence		E	I	Y	C	R	S	D	D	A	X	H	I	W	K	K	I	I	D	A	G	D	A	Y	G	L	I	P	C	G	L	G	A	R	D	T	L	R	F	E	A	N	I	P	L	Y	G	Q	E	L	T	R	D	I	T	P	I	E	A	G	I	G	F	A	V	K	H	K	.	K	E	S	D	F	F	G	K	S	V	L	S
Template Known Secondary structure							G	G	G													G	G	G	T																T	T				B	T	T	T	B	B	T	T	B		T	T	T	T	T		G	G	G			T	T	.		S	S			T	T
Template Predicted Secondary structure																																																																					.
Template SS confidence
		196	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.		.	.	.	.	.	.	.	270	.	.	.	.
		237	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.			.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.
Predicted Secondary structure																																																				.	.																												.
Query SS confidence																																																				.	.																												.
Query Sequence		R	A	K	F	R	G	A	N	K	R	A	L	W	L	L	A	G	S	A	S	R	L	P	E	A	G	E	D	L	E	L	K	M	G	E	N	W	R	R	T	G	T	V	L	A	A	V	K	L	E	.	.	D	G	Q	V	V	V	Q	V	V	M	N	N	D	M	E	P	D	S	I	F	R	V	R	D	D	A	N	.
Query Conservation																																																				.	.																												.
Alig confidence								.																									.	.	.	.																.	.																												.
Template Conservation								.																									.	.	.	.
Template Sequence		E	Q	K	E	N	G	.	A	K	R	K	L	V	G	L	E	X	I	E	K	G	I	P	R	H	G	Y	E	V	F	Q	.	.	.	.	N	G	K	S	V	G	K	V	T	T	G	T	Q	S	P	T	L	G	K	N	V	G	L	A	L	I	D	S	E	T	S	E	I	G	T	V	V	D	V	E	I	R	K	K	L
Template Known Secondary structure								.		S									S	S	S					T	T						.	.	.	.	T	T													T	T	T	T										G	G	G		S	T	T								T	T
Template Predicted Secondary structure								.																									.	.	.	.
Template SS confidence
		275	.	.	.	.	280		.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.					.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.
			314	.	.	.	.	.	320	.	.
Predicted Secondary structure		.
Query SS confidence		.
Query Sequence		.	T	L	H	I	E	P	L	P	Y
Query Conservation		.
Alig confidence		.
Template Conservation
Template Sequence		V	K	A	K	V	V	K	T	P	F
Template Known Secondary structure									S		S
Template Predicted Secondary structure
Template SS confidence
		350	.	.	.	.	.	.	.	.	.

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions