Job Description P0ADE8 Confidence 100.00% Date Thu Jan 5 11:20:50 GMT 2012 Rank 7 Aligned Residues 308 % Identity 16% Template c1v5vA_ PDB info PDB header:transferase Chain: A: PDB Molecule:aminomethyltransferase; PDBTitle: crystal structure of a component of glycine cleavage system: t-protein2 from pyrococcus horikoshii ot3 at 1.5 a resolution Resolution 1.50 Å

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		11	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.		.	80	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																																																																						.
Query SS confidence																																																																						.
Query Sequence		P	T	A	S	A	R	L	P	L	T	L	M	T	L	D	D	W	A	L	A	T	I	T	G	A	D	S	E	K	Y	M	Q	G	Q	V	T	A	D	V	S	Q	M	A	E	D	Q	H	L	L	A	A	H	C	D	A	K	G	K	M	W	S	N	L	R	L	F	R	D	.	G	D	G	F	A	W	I	E	R	R	S
Query Conservation																																																																						.
Alig confidence																																																																						.
Template Conservation
Template Sequence		E	H	L	A	V	R	N	A	V	G	I	F	D	V	S	H	M	G	E	I	V	F	R	G	K	D	A	L	K	F	L	Q	Y	V	T	T	N	D	I	S	K	P	P	A	I	S	G	T	Y	T	L	V	L	N	E	R	G	A	I	K	D	E	T	L	V	F	N	M	G	N	N	E	Y	L	M	I	C	D	S	D
Template Known Secondary structure									S							T	T	S							S	T	T									S	S	S		T	T	S	S		S	S										T	T	S													T	T								T	T
Template Predicted Secondary structure
Template SS confidence
		39	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.
		90	.	.	.	.	.	.	.	.	.	100	.	.							.	.	.	.	.	.	.	110	.	.	.	.		.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.							140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.
Predicted Secondary structure															.	.	.	.	.	.													.																										.	.	.	.	.	.
Query SS confidence															.	.	.	.	.	.													.																										.	.	.	.	.	.
Query Sequence		V	R	E	P	Q	L	T	E	L	K	K	Y	A	.	.	.	.	.	.	V	F	S	K	V	T	I	A	P	D	D	E	.	R	V	L	L	G	V	A	G	F	Q	A	R	A	A	L	A	N	L	F	S	E	L	P	S	K	.	.	.	.	.	.	E	K	Q	V	V	K	E	G	A	T	T	L	L	W	F	E	H
Query Conservation															.	.	.	.	.	.													.																										.	.	.	.	.	.
Alig confidence															.	.	.	.	.	.													.																										.	.	.	.	.	.
Template Conservation
Template Sequence		A	F	E	K	L	Y	A	W	F	T	Y	L	K	R	T	I	E	Q	F	T	K	L	D	L	E	I	E	L	K	T	Y	D	I	A	M	F	A	V	Q	G	P	K	A	R	D	L	A	K	D	L	F	G	I	D	I	N	E	M	W	W	F	Q	A	R	W	V	E	L	D	G	I	K	M	L	L	S	R	S	G	Y
Template Known Secondary structure		T																	T	T	S										T	T	T								S	T	T										S			G	G	G	S		T	T	B							T	T										S
Template Predicted Secondary structure
Template SS confidence
		119	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.
		157	.	.		160	.	.	.	.	.	.	.															.	.	170	.	.	.	.	.	.	.	.	.	180	.						.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.
Predicted Secondary structure					.									.	.	.	.	.	.	.	.	.	.	.	.	.	.															.	.	.	.	.																											.	.	.	.	.	.	.	.	.
Query SS confidence					.									.	.	.	.	.	.	.	.	.	.	.	.	.	.															.	.	.	.	.																											.	.	.	.	.	.	.	.	.
Query Sequence		P	A	E	.	R	F	L	I	V	T	D	E	.	.	.	.	.	.	.	.	.	.	.	.	.	.	A	T	A	N	M	L	T	D	K	L	R	G	E	A	.	.	.	.	.	E	L	N	N	S	Q	Q	W	L	A	L	N	I	E	A	G	F	P	V	I	D	A	A	N	S	G	.	.	.	.	.	.	.	.	.
Query Conservation					.									.	.	.	.	.	.	.	.	.	.	.	.	.	.															.	.	.	.	.																											.	.	.	.	.	.	.	.	.
Alig confidence					.									.	.	.	.	.	.	.	.	.	.	.	.	.	.															.	.	.	.	.																											.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		T	G	E	N	G	F	E	V	Y	I	E	D	A	N	P	Y	H	P	D	E	S	K	R	G	E	P	E	K	A	L	H	V	W	E	R	I	L	E	E	G	K	K	Y	G	I	K	P	C	G	L	G	A	R	D	T	L	R	L	E	A	G	Y	T	L	Y	G	N	E	T	K	E	L	Q	L	L	S	T	D	I	D
Template Known Secondary structure		S	S	S												T	T		S	S	G	G	G																			G	G	G	T																	T				B	T	T	T	B						S	S		S
Template Predicted Secondary structure
Template SS confidence
		199	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.
		208	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.
Predicted Secondary structure																																																																																	.
Query SS confidence																																																																																	.
Query Sequence		Q	F	I	P	Q	A	T	N	L	Q	A	L	G	G	I	S	F	K	K	G	C	Y	T	G	Q	E	M	V	A	R	A	K	F	R	G	A	N	K	R	A	L	W	L	L	A	G	S	A	S	R	L	P	E	A	G	E	D	L	E	L	K	M	G	E	N	W	R	R	T	G	T	V	L	A	A	V	K	L	E	.
Query Conservation																																																																																	.
Alig confidence														.	.							.															.																									.	.	.	.																.
Template Conservation														.	.							.															.																									.	.	.	.
Template Sequence		E	V	T	P	L	Q	A	N	L	E	F	A	.	.	I	Y	W	D	K	D	.	F	I	G	K	D	A	L	L	K	Q	K	E	R	G	.	V	G	R	K	L	V	H	F	K	M	I	D	K	G	I	P	R	E	G	Y	K	V	Y	A	.	.	.	.	N	G	E	M	I	G	E	V	T	S	G	T	L	S	P	L
Template Known Secondary structure		S	S		T	T	T	T	T		G	G	G	.	.			T	T	S		.		T	T												.											S	S	S					T	T						.	.	.	.	T	T													T	T
Template Predicted Secondary structure														.	.							.															.																									.	.	.	.
Template SS confidence
		279	280	.	.	.	.	.	.	.	.	.	290			.	.	.	.	.	.		.	.	.	300	.	.	.	.	.	.	.	.	.	310		.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.					.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350
			287	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.			.	.	.	.	.	.	.	320	.	.	.	.	.	.
Predicted Secondary structure		.																											.	.
Query SS confidence		.																											.	.
Query Sequence		.	D	G	Q	V	V	V	Q	V	V	M	N	N	D	M	E	P	D	S	I	F	R	V	R	D	D	A	.	.	N	T	L	H	I	E	P	L	P	Y	S	L	E	E
Query Conservation		.																											.	.
Alig confidence		.																											.	.
Template Conservation
Template Sequence		L	N	V	G	I	G	I	A	F	V	K	E	E	Y	A	K	P	G	I	E	I	E	V	E	I	R	G	Q	R	K	K	A	V	T	V	T	P	P	F	Y	D	P	K
Template Known Secondary structure		T		S									G	G	G		S	T	T								T	T										S		S	S		T	T
Template Predicted Secondary structure
Template SS confidence
		351	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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