 |
Job Description | P13009 | Confidence | 48.24% | Date | Thu Jan 5 11:33:23 GMT 2012 |
Rank | 269 | Aligned Residues | 94 |
% Identity | 15% | Template | d3bzka5 |
SCOP info | Ribonuclease H-like motif
| Ribonuclease H-like
| Tex RuvX-like domain-like
|
Resolution | 2.30 |
|
 |
  |   |
746 | . | . | . | 750 | . | . | . | . | . | . | . | . | . | 760 | . | . | |
. | . | . | . | |
. | . | . | 770 | . | . | . | . | . | . | . | . | . | 780 | . | . | . | . | . | . | |
|
|
|
|
|
|
|
|
|
. | . | . | 790 | . | . | . | . | . | . | . | . | . | 800 | . | . | . | . | . | . | . | . | . | 810 | . | . | . |
Predicted Secondary structure |   |
|
|
|  |  |  |  |  |  |
|
|
|  |  |  |  |  | . |  |  |  |  | . |  |  |  |  |  |  |
|
|
|  |  |  |  |  |
|
|
|
|
|  | . | . | . | . | . | . | . | . | . | . |  |  |  |  |  |  |  |  |  |  |
|
|
|  |  |  |  |
|
|
|  |  |
|
|  |  |  |
Query SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
|
|
|
| . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
. |
. |
. |
. |
. |
. |
. |
. |
. |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Query Sequence |   |
N | G | K | M | V | I | A | T | V | K | G | D | V | H | D | I | G | . |
K | N | I | V | . |
G | V | V | L | Q | C | N | N | Y | E | I | V | D | L | G | V | M | V | P | A | . |
. |
. |
. |
. |
. |
. |
. |
. |
. |
E | K | I | L | R | T | A | K | E | V | N | A | D | L | I | G | L | S | G | L | I | T | P | S | L | D | E |
Query Conservation |   |
|
|   |
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
|
|
|
| . |   |   |
|
|   |
|
|
|
|   |
|
|
|
|
|   |   |
|
|   | . | . | . | . | . | . | . | . | . | . |
|   |
|
|   |   |
|   |
|   |   |
|
|   |
|
|
|
|
|
|
|
|   |
|   |   |   |
Alig confidence |   |
|
|
|
|
|
|
|
| . | . | . | . | . | . |
|
|
| . |
|
|
|
| . |
|
|
|
|
|
|
|
| . |
|
|
|
|
|
|
|
|
|
|
| . | . | . | . | . | . | . | . | . | . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
|
|
|
|
|
|
|
|
|
Template Conservation |   |
  |   |   |   |
|
|
|
| . | . | . | . | . | . |
|
|
|   |
|   |
|
|
|   |
|
|
|
|
|   |
| . |   |
|
|   |   |   |
|
|   |   |   |   |   |   |   |   |   |   |   |
|   |   |   |
|   |   |
|
|   |
|   |   |
|   |
|
|
|
| . |
|
|
|
|
|
|
|
|   |
Template Sequence |   |
G | P | R | A | T | L | G | L | . |
. |
. |
. |
. |
. |
D | P | G | L | R | T | G | V | K | V | A | V | V | D | A | T | G | . |
K | L | L | D | T | A | T | V | Y | P | H | A | P | K | N | Q | W | D | Q | T | L | A | V | L | A | A | L | C | A | K | H | Q | V | E | L | I | A | I | . |
G | N | G | T | A | S | R | E | T |
Template Known Secondary structure |   |
| S |
|
|  |  |  |  | . | . | . | . | . | . |  |
|
| S | T | T |
|  |  |  |  |  |  |
| T | T | S | . |
|  |  |  |  |  |  |  |
|
| S | T | T | T |
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |  | T | T |
|
|  |  |  |  | . |  | S | S | T | T |  |  |  |  |
Template Predicted Secondary structure |   |
|
|
|  |  |  |  |  | . | . | . | . | . | . |
|
|
|
|
|
|
|  |  |  |  |  |  |
|
|
|
| . |
|  |  |  |  |  |  |  |  |  |
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|  |  |  |  |  | . |
|
|
|  |  |  |  |  |  |
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
327 | . | . | 330 | . | . | . | . | |
|
|
|
|
|
. | . | . | . | . | 340 | . | . | . | . | . | . | . | . | . | 350 | . | |
. | . | . | . | . | . | . | . | 360 | . | . | . | . | . | . | . | . | . | 370 | . | . | . | . | . | . | . | . | . | 380 | . | . | . | . | . | . | . | . | . | |
390 | . | . | . | . | . | . | . | . |
  |
  |   |
814 | . | . | . | . | . | 820 | . | . | . | . | . | |
. | . | . | . | 830 | . | . | . | . | . | . | . | . | . | 840 | . | . | . | . | . | . | . |
Predicted Secondary structure |   |
 |  |  |  |  |  |  |  |  |  |
|
| . |
|
|
|
|  |  |  |  |
|
|
|
|
|  |  |  |  |  |  |  |
|
|
Query SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
| . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Query Sequence |   |
M | V | N | V | A | K | E | M | E | R | Q | G | . |
F | T | I | P | L | L | I | G | G | A | T | T | S | K | A | H | T | A | V | K | I | E |
Query Conservation |   |
|   |   |   |   |   |   |
|   |   |   |
| . |   |   |   |
|
|
|
|
|
|
|   |   |
|   |   |   |   |   |   |   |   |   |
Alig confidence |   |
|
|
|
|
|
|
|
|
|
|
|
| . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Template Conservation |   |
  |   |   |
|   |   |
|   |   |   |   |   |   |   |   |
|   |   |   |
|
|   |
|   |
|
|
|
|
|
|   |
|   |   |
|
Template Sequence |   |
D | K | L | A | G | E | L | I | K | K | Y | P | G | M | K | L | T | K | I | M | V | S | E | A | G | A | S | V | Y | S | A | S | E | L | A |
Template Known Secondary structure |   |
 |  |  |  |  |  |  |  |  |  |
| G | G | G |
|
|  |  |  |  |  |
|
| T | T |  |  |  |  |  | T | S |  |  |  |
Template Predicted Secondary structure |   |
 |  |  |  |  |  |  |  |  |  |
|
|
|
|
|
|
|  |  |  |  |
|
|
|  |  |  |  |  |
|
|
|  |  |  |
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
399 | 400 | . | . | . | . | . | . | . | . | . | 410 | . | . | . | . | . | . | . | . | . | 420 | . | . | . | . | . | . | . | . | . | 430 | . | . | . |
  |
No model constructed - rank, confidence too low
Phyre is for academic use only
Please cite: Protein structure prediction on
the web: a case study using the Phyre server |
Kelley LA and Sternberg MJE. Nature Protocols
4, 363 - 371 (2009) [pdf] [Import into BibTeX] |
  |
|
|