Return to main results Retrieve Phyre Job Id

Job DescriptionP13009
Confidence90.71%DateThu Jan 5 11:33:23 GMT 2012
Rank93Aligned Residues197
% Identity17%Templated2d69a1
SCOP infoTIM beta/alpha-barrel RuBisCo, C-terminal domain RuBisCo, large subunit, C-terminal domain
Resolution1.90

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   249250.........260.........270 .........280.........290.........300.........310.........320.....
Predicted Secondary structure 





...






















Query SS confidence 





















. . .






















































Query Sequence  LGPDELRQYVQELSRIAECYVT. . . AHPNAGLPNAFGEYDLDADTMAKQIREWAQAGFLNIVGGCCGTTPQHIAAMSRAV
Query Conservation   


 
   

 
      

 ...







     
  


 

      
 
 

 












 



 
Alig confidence 





















...





.........













.
























Template Conservation   

 


 


  


  


  




  
.........

    
   
  
. 



 




 
      
   

Template Sequence  KGPQFGVQGIREFMGVKDRPLTATVPKPKMG. . . . . . . . . WSVEEYAEIAYELW. SGGIDLLKDDENFTSFPFNRFEERV
Template Known Secondary structure 


SST

SS


SSSS
.........

.TT
S

TT
S
BTTB
Template Predicted Secondary structure 
















.........

.















Template SS confidence 















































































   134.....140.........150.........160.... .....170........ .180.........190.........200...
 
   326...330.........340.........350.........360.........370.........380.........390.........400.....
Predicted Secondary structure 





































Query SS confidence 















































































Query Sequence  EGLAPRKLPEIPVACRLSGLEPLNIGEDSLFVNVGERTNVTGSAKFKRLIKEEKYSEALDVARQQVENGAQIIDINMDEG
Query Conservation      
            
               



 
 



 
   
        
  
  

  

 





   
Alig confidence 





















................



...........


























Template Conservation      


  
  


    
  ................


 ...........    
 


  
 
 

   

     
Template Sequence  RKLYRVRDRVEAETGETKEYLI. . . . . . . . . . . . . . . . NITG. . . . . . . . . . . PVNIMEKRAEMVANEGGQYVMIDIVVA
Template Known Secondary structure  SS


................B

S...........ST

Template Predicted Secondary structure 


................

...........






Template SS confidence 















































































   204.....210.........220..... .... 230.........240.........250......
 
   406...410.........420.........430.........440.........450.........460.........470.........480.....
Predicted Secondary structure 

























Query SS confidence 















































































Query Sequence  MLDAEAAMVRFLNLIAGEPDIARVPIMIDSSKWDVIEKGLKCIQGKGIVNSISMKEGVDAFIHHAKLLRRYGAAVVVMAF
Query Conservation    
    
                

 



   






   

 





 




       
 







 
  
Alig confidence 















.......












..............








.



















Template Conservation 
  

  
        .......


 

 
  

 ..............      


.  

 

 





      
Template Sequence  GWSALQYMREVTEDLG. . . . . . . LAIHAHRAMHAAF. . . . . . . . . . . . . . TRNPRHGIT. MLALAKAARMIGVDQIHTGT
Template Known Secondary structure 
T.......

TTT..............S
TTSS

.T
S


Template Predicted Secondary structure 





.......




..............







.





Template SS confidence 















































































   257..260.........270.. .......280..... ....290.... .....300.........310....
 
   486...490.........500....
Predicted Secondary structure 







Query SS confidence 


















Query Sequence  DEQGQADTRARKIEICRRA
Query Conservation 

 
 
 
 
 
  

 
 
Alig confidence 


















Template Conservation    

              
Template Sequence  AVGKMAGNYEEIKRINDFL
Template Known Secondary structure 

SSS


Template Predicted Secondary structure 







Template SS confidence 


















   315....320.........330...
 
Download:Text version

No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys 
Disclaimer
Terms and Conditions