Job Description P13009 Confidence 100.00% Date Thu Jan 5 11:33:23 GMT 2012 Rank 5 Aligned Residues 334 % Identity 23% Template d1umya_ SCOP info TIM beta/alpha-barrel Homocysteine S-methyltransferase Homocysteine S-methyltransferase Resolution 2.5

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		8	.	10	.	.	.	.	.		.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.
Predicted Secondary structure										.
Query SS confidence										.
Query Sequence		L	R	A	Q	L	N	E	R	.	I	L	V	L	D	G	G	M	G	T	M	I	Q	S	Y	R	L	N	E	A	D	F	R	G	E	R	F	A	D	W	P	C	D	L	K	G	N	N	D	L	L	V	L	S	K	P	E	V	I	A	A	I	H	N	A	Y	F	E	A	G	A	D	I	I	E	T	N	T	F	N	S
Query Conservation										.
Alig confidence										.																						.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		I	L	E	R	L	N	A	G	E	V	V	I	G	D	G	G	F	V	F	A	L	E	K	R	G	Y	V	K	A	G	.	.	.	.	.	.	.	.	.	.	.	.	.	.	P	W	T	P	E	A	A	V	E	H	P	E	A	V	R	Q	L	H	R	E	F	L	R	A	G	S	N	V	M	Q	T	F	T	F	Y	A
Template Known Secondary structure								T	T																	T	S	S		T	T	.	.	.	.	.	.	.	.	.	.	.	.	.	.	T				T																				T
Template Predicted Secondary structure																																.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		13	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.															.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.
		87	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		T	T	I	A	M	A	D	Y	Q	M	E	S	L	S	A	E	I	N	F	A	A	A	K	L	A	R	A	C	A	D	E	W	T	A	R	T	P	E	K	P	R	Y	V	A	G	V	L	G	P	T	N	R	T	A	S	I	S	P	D	V	N	D	P	A	F	R	N	I	T	F	D	G	L	V	A	A	Y	R	E	S
Query Conservation
Alig confidence			.	.	.	.	.	.	.	.	.	.	.																				.	.	.	.	.	.	.																.	.	.	.	.	.	.	.	.	.	.
Template Conservation			.	.	.	.	.	.	.	.	.	.	.																				.	.	.	.	.	.	.																.	.	.	.	.	.	.	.	.	.	.
Template Sequence		S	.	.	.	.	.	.	.	.	.	.	.	S	G	Q	K	V	N	E	A	A	C	D	I	A	R	Q	V	A	D	E	.	.	.	.	.	.	.	G	D	A	L	V	A	G	G	V	S	Q	T	P	S	Y	.	.	.	.	.	.	.	.	.	.	.	L	S	C	K	S	E	T	E	V	K	K	I	F	H	Q	Q
Template Known Secondary structure			.	.	.	.	.	.	.	.	.	.	.																			T	.	.	.	.	.	.	.	T	T														.	.	.	.	.	.	.	.	.	.	.		T	T
Template Predicted Secondary structure			.	.	.	.	.	.	.	.	.	.	.																				.	.	.	.	.	.	.																.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		79												80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.								.	100	.	.	.	.	.	.	.	.	.	110	.	.	.												.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.
		167	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		T	K	A	L	V	E	G	G	A	D	L	I	L	I	E	T	V	F	D	T	L	N	A	K	A	A	V	F	A	V	K	T	E	F	E	A	L	G	V	E	L	P	I	M	I	S	G	T	I	T	D	A	S	G	R	T	L	S	G	Q	T	T	E	A	F	Y	N	S	L	R	H	A	E	A	L	T	F	G	L	N
Query Conservation
Alig confidence																																		.	.	.	.	.	.												.					.
Template Conservation																																		.	.	.	.	.	.												.					.
Template Sequence		L	E	V	F	M	K	K	N	V	D	F	L	I	A	E	Y	F	E	H	V	E	E	A	V	W	A	V	E	A	L	K	T	.	.	.	.	.	.	S	G	K	P	I	A	A	T	M	C	I	.	G	P	E	G	.	D	L	H	G	V	S	P	G	E	C	A	V	R	L	V	K	A	G	A	A	I	V	G	V	N
Template Known Secondary structure								T	T		S								S														T	.	.	.	.	.	.	T		S									.		T	T		.		T	T														T	T		S
Template Predicted Secondary structure																																		.	.	.	.	.	.												.					.
Template SS confidence
		145	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.							.	.	.	180	.	.	.	.	.	.	.		.	.	190	.		.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.
		247	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.						.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.																.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.
Predicted Secondary structure																							.	.	.	.	.																	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																							.	.	.	.	.																	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		C	A	L	G	P	D	E	L	R	Q	Y	V	Q	E	L	S	R	I	A	E	C	.	.	.	.	.	Y	V	T	A	H	P	N	A	G	L	P	N	A	F	G	E	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	Y	D	L	D	A	D	T	M	A	K	Q	I	R	E	W	A	Q	A	G	F	L	N	I
Query Conservation																							.	.	.	.	.																	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																							.	.	.	.	.																	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																	.
Template Conservation																																																																											.
Template Sequence		C	H	F	D	P	S	T	S	L	Q	T	I	K	L	M	K	E	G	L	E	A	A	R	L	K	A	Y	L	M	S	Q	P	L	A	Y	H	T	P	D	C	G	K	Q	G	F	I	D	L	P	E	F	P	F	G	L	E	P	R	V	A	T	R	W	D	I	Q	K	Y	A	R	E	A	Y	.	N	L	G	V	R	Y
Template Known Secondary structure		S	S	S																		T	T	T											S	B			T	T			S	S	T	G	G	G	S	T	T	T	T	T	S		G	G	G	B															.			T
Template Predicted Secondary structure																																																																											.
Template SS confidence
		217	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.		290	.	.	.	.	.
		307	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.												.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.
Predicted Secondary structure																																																.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																																.	.	.	.	.	.	.	.	.	.	.
Query Sequence		V	G	G	C	C	G	T	T	P	Q	H	I	A	A	M	S	R	A	V	E	G	L	A	P	R	K	L	P	E	I	P	V	A	C	R	L	S	G	L	E	P	L	N	I	G	E	.	.	.	.	.	.	.	.	.	.	.	D	S	L	F	V	N	V	G	E	R	T	N	V	T	G	S	A	K	F	K	R	L	I
Query Conservation																																																.	.	.	.	.	.	.	.	.	.	.
Alig confidence																																																.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		I	G	G	C	C	G	F	E	P	Y	H	I	R	A	I	A	E	E	L	A	P	E	R	G	F	L	P	P	A	S	E	K	H	G	S	W	G	S	G	L	D	M	H	T	K	P	W	I	R	A	R	A	R	K	E	Y	W	Q	N	L	R	I	A	S	G	R	P	Y	N	P	S	M	S	K	P	D	A	W	G	V
Template Known Secondary structure						T	T													T					T				G	G	G	G	G			S	S	S	G	G	G	S	S		S						T	T		S												S		T	T	S		S
Template Predicted Secondary structure
Template SS confidence
		296	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.
		376	.	.	.	380	.	.	.	.	.				.	.	.	.	390	.	.	.
Predicted Secondary structure												.	.	.
Query SS confidence												.	.	.
Query Sequence		K	E	E	K	Y	S	E	A	L	D	.	.	.	V	A	R	Q	Q	V	E	N
Query Conservation												.	.	.
Alig confidence												.	.	.
Template Conservation
Template Sequence		T	K	G	A	A	E	L	M	Q	Q	K	E	A	T	T	E	Q	Q	L	R	A
Template Known Secondary structure			S
Template Predicted Secondary structure
Template SS confidence
		376	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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