 |
Job Description | P13009 | Confidence | 94.17% | Date | Thu Jan 5 11:33:23 GMT 2012 |
Rank | 71 | Aligned Residues | 138 |
% Identity | 14% | Template | c6reqB_ |
PDB info |
PDB header:isomerase | Chain: B: PDB Molecule:protein (methylmalonyl-coa mutase); |
PDBTitle: methylmalonyl-coa mutase, 3-carboxypropyl-coa inhibitor complex
|
Resolution | 2.20 Å |
|
 |
  |   |
727 | . | . | 730 | . | . | . | . | . | . | . | . | . | 740 | . | . | . | . | . | . | . | . | . | 750 | . | . | . | . | . | . | |
. | . | . | 760 | . | . | . | . | . | . | . | . | . | 770 | . | . | . | . | . | . | . | . | . | 780 | . | . | . | . | . | . | . | . | . | 790 | . | . | . | . | . | . | . | . | . | 800 | . | . | . | . | . |
Predicted Secondary structure |   |
 |  |  |  |  |  |  |  |  |  |  |
|
|
|
|
|
|
|
|
|
|
|  |  |  |  |  |  |
|
| . |
|  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|  |  |  |  |  |
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |
|
|
|  |  |  |  |
|
|
Query SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Query Sequence |   |
Q | A | V | A | Y | L | E | P | F | I | E | A | S | K | E | Q | G | K | T | N | G | K | M | V | I | A | T | V | K | G | . |
D | V | H | D | I | G | K | N | I | V | G | V | V | L | Q | C | N | N | Y | E | I | V | D | L | G | V | M | V | P | A | E | K | I | L | R | T | A | K | E | V | N | A | D | L | I | G | L | S | G |
Query Conservation |   |
  |
|
|   |   |
|   |   |   |
|
|   |   |   |   |   |   |   |   |
|
|   |
|
|
|
|
|
|
|
| . |
|
|
|
|
|
|
|
|
|
|   |   |
|
|   |
|
|
|
|   |
|
|
|
|
|   |   |
|
|   |
|   |
|
|   |   |
|   |
|   |   |
|
|   |
|
|
|
|
|
Alig confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . | . | . | . |
|
|
|
|
|
|
|
|
|
|
| . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Template Conservation |   |
  |   |
|
|   |
|
|   |   |   |   |   |   |
|   | . | . | . | . |
|
|   |
|
|
|
|   |
|
|   |   |
|   |
|   |
|
|
|   |
|
|   |   |
|
|   |   |
|
|
|
|
|   |   |   |   | . |   |   |
|   |   |
|   |
|   |
|   |   |   |
|
|
|   |
|   |
|
|
|
|
Template Sequence |   |
E | V | F | E | Q | L | M | D | R | S | T | S | V | S | E | . |
. |
. |
. |
R | P | K | V | F | L | A | C | L | G | T | R | R | D | F | G | G | R | E | G | F | S | S | P | V | W | H | I | A | G | I | D | T | P | Q | V | E | . |
G | G | T | T | A | E | I | V | E | A | F | K | K | S | G | A | Q | V | A | D | L | C | S |
Template Known Secondary structure |   |
 |  |  |  |  |  |  |  |  |  |  |  | S | S | S | . | . | . | . |
|
| B |
|  |  |  |  |
| S |
|  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | T | T |
| B |
|
|  |  |  | . |
|
|
|  |  |  |  |  |  |  |  |  |  |  | T |
| S |  |  |  |  |  |
|
Template Predicted Secondary structure |   |
 |  |  |  |  |  |  |  |  |  |  |  |
|
|
| . | . | . | . |
|
|  |  |  |  |  |
|
|
|
|  |  |  |
|
|
|  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|
|
|
|
|
| . |
|
|
|  |  |  |  |  |  |  |  |  |  |
|
|
|
|  |  |  |  |  |
|
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
495 | . | . | . | . | 500 | . | . | . | . | . | . | . | . | . | |
|
|
|
510 | . | . | . | . | . | . | . | . | . | 520 | . | . | . | . | . | . | . | . | . | 530 | . | . | . | . | . | . | . | . | . | 540 | . | . | . | . | . | . | |
. | . | . | 550 | . | . | . | . | . | . | . | . | . | 560 | . | . | . | . | . | . | . | . | . |
  |
  |   |
806 | . | . | . | 810 | . | . | . | . | . | . | . | . | . | 820 | . | . | . | . | . | . | . | . | . | 830 | . | . | . | . | . | . | . | |
|
. | . | 840 | . | . | . | . | . | . | . | . | . | 850 | . | . | . | . | . | . | . | . | . | 860 | . | . | . | . | . | . | . | . | . | 870 | . | . |
Predicted Secondary structure |   |
|  |  |
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|
|
|  |  |  |  |
|
|
|
| . | . |
|  |  |  |  |  |  |  |
|
|
|
|
|
|
|
|  |  |  |
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |
|
Query SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
. |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Query Sequence |   |
L | I | T | P | S | L | D | E | M | V | N | V | A | K | E | M | E | R | Q | G | F | T | I | P | L | L | I | G | G | A | T | T | . |
. |
S | K | A | H | T | A | V | K | I | E | Q | N | Y | S | G | P | T | V | Y | V | Q | N | A | S | R | T | V | G | V | V | A | A | L | L | S |
Query Conservation |   |
|
|
|   |
|   |   |   |
|   |   |   |   |   |   |
|   |   |   |
|   |   |   |
|
|
|
|
|
|
|   |   | . | . |
|   |   |   |   |   |   |   |   |   |   |   |
|   |
|   |
|   |
|   |   |
|
|   |   |   |
|   |   |   |   |   |
|   |   |
Alig confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . | . |
|
|
|
|
|
|
|
|
|
|
|
|
| . | . | . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Template Conservation |   |
|
|   |   |
|   |   |   |   |   |   |   |   |   |   |
|
|   |
|
|   |   |   |
|   |
|
|
|   |
|   |   |   |   |   |   |   |   |   |   |   |
|
|
|
|   |
| . | . | . |
|   |   |
|   |
|   |   |   |   |
|   |   |   |   |   |   |   |
|
Template Sequence |   |
S | A | K | V | Y | A | Q | Q | G | L | E | V | A | K | A | L | K | A | A | G | A | K | A | L | Y | L | S | G | A | F | K | E | F | G | D | D | A | A | E | A | E | K | L | I | D | G | R | . |
. |
. |
L | F | M | G | M | D | V | V | D | T | L | S | S | T | L | D | I | L | G |
Template Known Secondary structure |   |
|  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | T | T |
| S |  |  |  |  |  | S |
| G | G | G | G | G | G | G |  |  |  |  |  |  |  |
|
|  |  | . | . | . |  |
| T | T |
|
|  |  |  |  |  |  |  |  |  |  |  | T | T |
Template Predicted Secondary structure |   |
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|  |  |  |  |  |
|
|
|
|
|  |  |  |  |  |  |  |  |  |
|
|
|
|
|
| . | . | . |
|
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |
|
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
570 | . | . | . | . | . | . | . | . | . | 580 | . | . | . | . | . | . | . | . | . | 590 | . | . | . | . | . | . | . | . | . | 600 | . | . | . | . | . | . | . | . | . | 610 | . | . | . | . | . | . | |
|
|
. | . | . | 620 | . | . | . | . | . | . | . | . | . | 630 | . | . | . | . | . |
  |
No model constructed - rank, confidence too low
Phyre is for academic use only
Please cite: Protein structure prediction on
the web: a case study using the Phyre server |
Kelley LA and Sternberg MJE. Nature Protocols
4, 363 - 371 (2009) [pdf] [Import into BibTeX] |
  |
|
|