Job Description P13009 Confidence 33.76% Date Thu Jan 5 11:33:23 GMT 2012 Rank 361 Aligned Residues 201 % Identity 14% Template c3thaB_ PDB info PDB header:lyase Chain: B: PDB Molecule:tryptophan synthase alpha chain; PDBTitle: tryptophan synthase subunit alpha from campylobacter jejuni. Resolution 2.37 Å

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		379	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.																		.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.
Predicted Secondary structure																																				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		K	Y	S	E	A	L	D	V	A	R	Q	Q	V	E	N	G	A	Q	I	I	D	I	N	M	D	E	G	M	L	D	A	E	A	A	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	M	V	R	F	L	N	L	I	A	G	E	P	D	I	A	R	V	P	I	M	I	D	S	S	K	W	D	V	I
Query Conservation																																				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																								.	.											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.												.	.
Template Conservation																								.	.																																							.	.
Template Sequence		N	L	Q	T	S	E	A	F	L	Q	R	L	D	Q	S	P	I	D	I	L	E	L	.	.	G	V	A	Y	S	D	P	I	A	D	G	E	I	I	A	D	A	A	K	I	A	L	D	Q	G	V	D	I	H	S	V	F	E	L	L	A	R	I	.	.	K	T	K	K	A	L	V	F	X	V	Y	Y	N	L	I	F
Template Known Secondary structure												T	G	G	G	S	S		S					.	.				S	S					S	S													T	T												T		.	.			S	S
Template Predicted Secondary structure																								.	.																																							.	.
Template SS confidence
		23	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.			.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.			.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.
		442	.	.	.	.	.	.							.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.
Predicted Secondary structure									.	.	.	.	.	.
Query SS confidence									.	.	.	.	.	.
Query Sequence		E	K	G	L	K	C	I	.	.	.	.	.	.	Q	G	K	G	I	V	N	S	I	S	M	K	E	G	V	D	A	F	I	H	H	A	K	L	L	R	R	Y	G	A	A	V	V	V	M	A	F	D	E	Q	G	Q	A	D	T	R	A	R	K	I	E	I	C	R	R	A	Y	K	I	L	T	E	E	V	G	F	P
Query Conservation									.	.	.	.	.	.
Alig confidence									.	.	.	.	.	.													.	.																							.	.	.	.	.																.	.	.	.	.	.	.	.	.	.	.
Template Conservation																											.	.																							.	.	.	.	.																.	.	.	.	.	.	.	.	.	.	.
Template Sequence		S	Y	G	L	E	K	F	V	K	K	A	K	S	L	G	I	C	A	L	I	V	P	E	L	S	.	.	F	E	E	S	D	D	L	I	K	E	C	E	R	Y	N	I	A	L	I	T	L	V	.	.	.	.	.	S	V	T	T	P	K	E	R	V	K	K	L	V	K	H	.	.	.	.	.	.	.	.	.	.	.
Template Known Secondary structure															T	T							T	T			.	.	G	G	G												T								.	.	.	.	.		T	T	S										T	T	.	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure																											.	.																							.	.	.	.	.																.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		99	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.			.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.						.	.	.	.	150	.	.	.	.	.	.	.	.	.	160
		516	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.	.	.	.	.	540	.	.	.	.	.	.	.	.	.	550	.	.	.	.	.	.	.	.	.	560	.	.	.	.	.	.	.	.	.	570	.	.	.	.	.	.	.	.	.	580	.	.	.	.	.	.	.	.	.	590	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		P	E	D	I	I	F	D	P	N	I	F	A	V	A	T	G	I	E	E	H	N	N	Y	A	Q	D	F	I	G	A	C	E	D	I	K	R	E	L	P	H	A	L	I	S	G	G	V	S	N	V	S	F	S	F	R	G	N	D	P	V	R	E	A	I	H	A	V	F	L	Y	Y	A	I	R	N	G	M	D	M	G
Query Conservation
Alig confidence		.																										.	.											.								.	.	.	.	.				.	.	.	.	.	.	.	.	.	.
Template Conservation		.																										.	.											.								.	.	.	.	.				.	.	.	.	.	.	.	.	.	.
Template Sequence		.	A	K	G	F	I	Y	L	L	A	S	I	G	I	T	G	T	K	S	V	E	E	A	I	L	Q	.	.	D	K	V	K	E	I	R	S	F	T	.	N	L	P	I	F	V	G	.	.	.	.	.	F	G	I	.	.	.	.	.	.	.	.	.	.	Q	N	N	Q	D	V	K	R	X	R	K	V	A	D	G	V
Template Known Secondary structure		.			S								S		S	S												.	.								T	T		.		S						.	.	.	.	.	S	S		.	.	.	.	.	.	.	.	.	.		S	S							T	T	T	S	S
Template Predicted Secondary structure		.																										.	.											.								.	.	.	.	.				.	.	.	.	.	.	.	.	.	.
Template SS confidence
			161	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.			.	.	.	.	190	.	.	.	.	.		.	.	.	.	200	.	.						.	.	.											.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.
		596	.	.	.	600	.	.	.	.	.	.	.	.	.	610	.	.	.		.	.	.	.	.	.	620
Predicted Secondary structure																				.
Query SS confidence																				.
Query Sequence		I	V	N	A	G	Q	L	A	I	Y	D	D	L	P	A	E	L	R	.	D	A	V	E	D	V	I
Query Conservation																				.
Alig confidence																				.
Template Conservation
Template Sequence		I	V	G	T	S	I	V	K	C	F	K	Q	G	N	L	D	I	I	X	K	D	I	E	E	I	F
Template Known Secondary structure											T	T	S	S												T	T
Template Predicted Secondary structure
Template SS confidence
		222	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions