Return to main results Retrieve Phyre Job Id

Job DescriptionP13009
Confidence95.82%DateThu Jan 5 11:33:23 GMT 2012
Rank51Aligned Residues167
% Identity11%Templatec3si9B_
PDB info PDB header:lyaseChain: B: PDB Molecule:dihydrodipicolinate synthase; PDBTitle: crystal structure of dihydrodipicolinate synthase from bartonella2 henselae
Resolution2.10 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   128.130.........140.........150.........160.........170.........180 .........190.........200..
Predicted Secondary structure 

























.....



Query SS confidence 




















































. . . . .





















Query Sequence  YVAGVLGPTNRTASISPDVNDPAFRNITFDGLVAAYRESTKALVEGGADLILI. . . . . ETVFDTLNAKAAVFAVKTEFEA
Query Conservation   






 
  
    
  

  
 





   
 


  
 
 






.....


 
  





 

 
    
Alig confidence 










............





....



















.....












..






Template Conservation 
     


  ............

 

 ....         
   

 

 
 
 


   

 


  
..       
Template Sequence  AVTALITPFDD. . . . . . . . . . . . NGAIDE. . . . KAFCNFVEWQITQGINGVSPVGTTGESPTLTHEEHKRI. . IELCVEQ
Template Known Secondary structure 



B
T............TS
B
....TT
S
SSTTTTGGG

..
Template Predicted Secondary structure 










............




....











..
Template SS confidence 















































































   910......... 20..... ....30.........40.........50.........60... ......70
 
   203......210.........220.........230.........240....... ..250.........260.........270........
Predicted Secondary structure 



















....











Query SS confidence 












































. . . .






























Query Sequence  LGVELPIMISGTITDASGRTLSGQTTEAFYNSLRHAEALTFGLNC. . . . ALGPDELRQYVQELSRIAECYVTAHPNAGLP
Query Conservation      


 

 
  
  



 

 



   
    
 





....
 


 
   

 
      

 







Alig confidence 

















.......



















....





























.
Template Conservation        

 

       ....... 
  
  
   


 


 

     
   
      

     





 
  .
Template Sequence  VAKRVPVVAGAGSNSTSE. . . . . . . AVELAKHAEKAGADAVLVVTPYYNRPNQRGLYTHFSSIAKAISIPIIIYNIPSR.
Template Known Secondary structure  TTSS
B


SS.......TT
S


SS



SS

.
Template Predicted Secondary structure 









.......




















.
Template SS confidence 















































































   71........80........ .90.........100.........110.........120.........130.........140..
 
   279280.........290.........300.........310.........320.......
Predicted Secondary structure 

















Query SS confidence 
















































Query Sequence  NAFGEYDLDADTMAKQIREWAQAGFLNIVGGCCGTTPQHIAAMSRAVEG
Query Conservation       
  


 

      
 
 

 












 



 
  
Alig confidence  ...
























....
















Template Conservation  ...

       
  
    
 
 


 ....
  
             
Template Sequence  . . . SVIDMAVETMRDLCRDFKNIIGVKD. . . . ATGKIERASEQREKCGK
Template Known Secondary structure  ...SS



TT....
S

T
T
Template Predicted Secondary structure  ...









....






Template SS confidence 
















































   143......150.........160....... ..170.........180....
 
Download:Text version

No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys 
Disclaimer
Terms and Conditions