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Job DescriptionP13009
Confidence93.65%DateThu Jan 5 11:33:23 GMT 2012
Rank74Aligned Residues187
% Identity19%Templatec3qfwB_
PDB info PDB header:lyaseChain: B: PDB Molecule:ribulose-1,5-bisphosphate carboxylase/oxygenase large PDBTitle: crystal structure of rubisco-like protein from rhodopseudomonas2 palustris
Resolution1.79 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   61........70.........80.........90.........100.........110.........120.........130.........140
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Query Sequence  PEVIAAIHNAYFEAGADIIETNTFNSTTIAMADYQMESLSAEINFAAAKLARACADEWTARTPEKPRYVAGVLGPTNRTA
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Template Sequence  PAALASIAHQLALGGVDLIKDDH. . . . . . . . . . . GLADQAFSPFAERAAAVGKAVREANAARGGRTLYAPNISGT. . . . .
Template Known Secondary structure  TT
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B

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   145....150.........160....... ..170.........180.........190.........200........
 
   141........150.........160.........170.........180.........190.........200.........210.........220
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Query Sequence  SISPDVNDPAFRNITFDGLVAAYRESTKALVEGGADLILIETVFDTLNAKAAVFAVKTEFEALGVELPIMISGTITDASG
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Template Sequence  . . . . . . . . . . . . . . . . . . . LDDMRRQLGVIRDEGIGAVLVAP. . . . . . MIVGVSNFHAIVKEA. AGLVVVAHPAM. . . AG
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   209210.........220.........230. ........240...... ...250....... ..
 
   221........230.........240.........250.........260.........270.........280.........290.........300
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Query Sequence  RTLSGQTTEAFYNSLRHAEALTFGLNCALGPDELRQYVQELSRIAECYVTAHPNAGLPNAFGEYDLDADTMAKQIREWAQ
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Template Sequence  AA. . . . . . . . . . . . . . . . . . . . . . . . . KIAAPL. . . LLGRLFRLFGADATVFPNYG. . . . . GRFAYSTASCLALAQAARD
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B
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   260. ...... ..270.........280....... ..290.........300......
 
   301.. ......310.........320.......
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Query Sequence  AGF. . . . . LNIVGGCCGTTPQHIAAMSRAVEG
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Template Sequence  PFGKLNACIPTPAG. . GIMLQRVNELLRFYGQ
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   307..310.........320 .........330......
 
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No model constructed - rank, confidence too low




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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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