Job Description P13009 Confidence 81.12% Date Thu Jan 5 11:33:23 GMT 2012 Rank 141 Aligned Residues 299 % Identity 13% Template c3nm3D_ PDB info PDB header:transferase Chain: D: PDB Molecule:thiamine biosynthetic bifunctional enzyme; PDBTitle: the crystal structure of candida glabrata thi6, a bifunctional enzyme2 involved in thiamin biosyhthesis of eukaryotes Resolution 3.10 Å

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		163	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180		.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.						.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.
Predicted Secondary structure																				.																																					.	.	.	.	.
Query SS confidence																				.																																					.	.	.	.	.
Query Sequence		Y	R	E	S	T	K	A	L	V	E	G	G	A	D	L	I	L	I	.	E	T	V	F	D	T	L	N	A	K	A	A	V	F	A	V	K	T	E	F	E	A	L	G	V	E	L	P	I	M	I	S	G	T	I	T	.	.	.	.	.	D	A	S	G	R	T	L	S	G	Q	T	T	E	A	F	Y	N	S	L	R
Query Conservation																				.																																					.	.	.	.	.
Alig confidence																				.																									.	.											.	.	.	.	.
Template Conservation																																													.	.
Template Sequence		L	Y	G	Q	V	E	A	G	L	Q	N	G	V	T	L	V	Q	I	R	E	K	D	A	D	T	K	F	F	I	E	E	A	L	Q	I	K	E	L	C	H	A	H	N	.	.	V	P	L	I	I	N	D	R	I	D	V	A	M	A	I	G	A	D	G	I	H	V	G	Q	D	D	M	P	I	P	M	I	R	K	L
Template Known Secondary structure											S	S										S	S	S		T	T																T	T	.	.							S									T		S						T	T	S	S
Template Predicted Secondary structure																																													.	.
Template SS confidence
		27	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.			70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.
		237	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270			.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.
Predicted Secondary structure																																				.	.																																.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																				.	.																																.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		H	A	E	A	L	T	F	G	L	N	C	A	L	G	P	D	E	L	R	Q	Y	V	Q	E	L	S	R	I	A	E	C	Y	V	T	.	.	A	H	P	N	A	G	L	P	N	A	F	G	E	Y	D	L	D	A	D	T	M	A	K	Q	I	R	E	W	A	Q	A	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Conservation																																				.	.																																.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence													.																							.	.										.	.	.	.																			.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation													.																																		.	.	.	.
Template Sequence		V	G	P	D	M	V	I	G	W	S	V	.	G	F	P	E	E	V	D	E	L	S	K	M	G	P	D	M	V	D	Y	I	G	V	G	T	L	F	P	T	L	T	K	K	N	.	.	.	.	K	K	M	G	T	A	G	A	I	R	V	L	D	A	L	E	R	N	N	A	H	W	C	R	T	V	G	I	G	G	L
Template Known Secondary structure				T	T	S							.		S	T								T	T		T	T	S										S			S	S				.	.	.	.																		T	T		T	T							S	S
Template Predicted Secondary structure													.																																		.	.	.	.
Template SS confidence
		105	.	.	.	.	110	.	.	.	.	.		.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.					.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.
																							302	.	.	.	.	.	.	.	310	.	.	.	.			.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.		.	.	.	.	.	340	.	.	.	.	.	.	.	.	.						350	.	.
Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.														.	.																					.																.	.	.	.	.
Query SS confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.														.	.																					.																.	.	.	.	.
Query Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	G	F	L	N	I	V	G	G	C	C	G	T	T	.	.	P	Q	H	I	A	A	M	S	R	A	V	E	G	L	A	P	R	K	L	P	.	E	I	P	V	A	C	R	L	S	G	L	E	P	L	N	.	.	.	.	.	I	G	E
Query Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.														.	.																					.																.	.	.	.	.
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.														.	.																					.																.	.	.	.	.
Template Conservation
Template Sequence		H	P	D	N	I	E	R	V	L	Y	Q	C	V	S	S	N	G	K	R	S	L	D	G	I	C	V	V	S	D	I	I	A	S	L	D	A	A	K	S	T	K	I	L	R	G	L	I	D	K	T	D	Y	K	F	V	N	I	G	L	S	T	K	N	S	L	T	T	T	D	E	I	Q	S	I	I	S	N	T	L	K
Template Known Secondary structure			T	T	T									B		T	T	S			B		S					S	T	T	T	T	T		T	T													T			B				S	S	S							S
Template Predicted Secondary structure
Template SS confidence
		183	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.
		353	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.									.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.		.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.
Predicted Secondary structure																										.	.	.	.	.	.	.	.																						.
Query SS confidence																										.	.	.	.	.	.	.	.																						.
Query Sequence		D	S	L	F	V	N	V	G	E	R	T	N	V	T	G	S	A	K	F	K	R	L	I	K	.	.	.	.	.	.	.	.	E	E	K	Y	S	E	A	L	D	V	A	R	Q	Q	V	E	N	G	A	Q	I	.	I	D	I	N	M	D	E	G	M	L	D	A	E	A	A	M	V	R	F	L	N	L	I	A	G	E
Query Conservation																										.	.	.	.	.	.	.	.																						.
Alig confidence						.	.																			.	.	.	.	.	.	.	.										.	.	.	.	.								.									.	.																.
Template Conservation						.	.																																				.	.	.	.	.																	.	.																.
Template Sequence		A	R	P	L	.	.	V	Q	H	I	T	N	K	V	H	Q	N	F	G	A	N	V	T	L	A	L	G	S	S	P	I	M	S	E	I	Q	S	E	V	N	D	.	.	.	.	.	L	A	A	I	P	H	A	T	L	L	L	N	T	G	S	V	.	.	A	P	P	E	M	L	K	A	A	I	R	A	Y	N	D	.
Template Known Secondary structure		S				.	.																				T	T									T	T	T				.	.	.	.	.		T	T	S	T	T							S	S		S	.	.	S															.
Template Predicted Secondary structure						.	.																																				.	.	.	.	.																	.	.																.
Template SS confidence
		263	.	.	.			.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.						.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.			.	.	320	.	.	.	.	.	.	.	.	.	330	.	.
		424	.	.	.	.	.	430	.	.	.	.				.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.										.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.
Predicted Secondary structure													.	.	.																				.	.	.	.	.	.	.	.	.
Query SS confidence													.	.	.																				.	.	.	.	.	.	.	.	.
Query Sequence		P	D	I	A	R	V	P	I	M	I	D	.	.	.	S	S	K	W	D	V	I	E	K	G	L	K	C	I	Q	G	K	G	I	.	.	.	.	.	.	.	.	.	V	N	S	I	S	M	K	E	G	V	D	A	F	I	H	H	A	K	L	L	R	R	Y	G	A	A	V	V	V
Query Conservation													.	.	.																				.	.	.	.	.	.	.	.	.
Alig confidence		.	.	.									.	.	.			.																	.	.	.	.	.	.	.	.	.
Template Conservation		.	.	.														.
Template Sequence		.	.	.	V	K	R	P	I	V	F	D	P	V	G	A	T	.	E	T	R	L	L	L	N	N	K	L	L	T	F	G	Q	F	S	C	I	K	G	N	S	S	E	I	L	G	L	A	E	L	S	N	E	L	L	I	Q	A	T	K	I	V	A	F	K	Y	K	T	V	A	V	C
Template Known Secondary structure		.	.	.	T	T												.											T	T	S	S			S														T																	T	T	S
Template Predicted Secondary structure		.	.	.														.
Template SS confidence
					333	.	.	.	.	.	.	340	.	.	.	.	.		.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions