Job Description P13009 Confidence 96.18% Date Thu Jan 5 11:33:23 GMT 2012 Rank 47 Aligned Residues 221 % Identity 15% Template c3n2xB_ PDB info PDB header:lyase Chain: B: PDB Molecule:uncharacterized protein yage; PDBTitle: crystal structure of yage, a prophage protein belonging to the2 dihydrodipicolinic acid synthase family from e. coli k12 in complex3 with pyruvate Resolution 2.20 Å

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		131	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180						.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.
Predicted Secondary structure																																																				.	.	.	.	.
Query SS confidence																																																				.	.	.	.	.
Query Sequence		G	V	L	G	P	T	N	R	T	A	S	I	S	P	D	V	N	D	P	A	F	R	N	I	T	F	D	G	L	V	A	A	Y	R	E	S	T	K	A	L	V	E	G	G	A	D	L	I	L	I	.	.	.	.	.	E	T	V	F	D	T	L	N	A	K	A	A	V	F	A	V	K	T	E	F	E	A	L	G	V
Query Conservation																																																				.	.	.	.	.
Alig confidence														.	.	.	.	.	.	.	.							.	.	.	.																					.	.	.	.	.														.	.
Template Conservation														.	.	.	.	.	.	.	.							.	.	.	.																																							.	.
Template Sequence		G	I	I	P	P	V	S	T	I	F	T	A	.	.	.	.	.	.	.	.	D	G	Q	L	D	K	.	.	.	.	P	G	T	A	A	L	I	D	D	L	I	K	A	G	V	D	G	L	F	F	L	G	S	G	G	E	F	S	Q	L	G	A	E	E	R	K	A	I	.	.	A	R	F	A	I	D	H	V	D	R
Template Known Secondary structure						B					B		T	.	.	.	.	.	.	.	.	T	S		B			.	.	.	.													T	T		S					S	S	T	T	T	T	G	G	G	S									.	.									T	T
Template Predicted Secondary structure														.	.	.	.	.	.	.	.							.	.	.	.																																							.	.
Template SS confidence
		16	.	.	.	20	.	.	.	.	.	.	.									.	.	30	.	.	.					.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.			.	.	.	.	.	.	.	.	80	.
		206	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.					250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.
Predicted Secondary structure																																														.	.	.	.
Query SS confidence																																														.	.	.	.
Query Sequence		E	L	P	I	M	I	S	G	T	I	T	D	A	S	G	R	T	L	S	G	Q	T	T	E	A	F	Y	N	S	L	R	H	A	E	A	L	T	F	G	L	N	C	A	L	.	.	.	.	G	P	D	E	L	R	Q	Y	V	Q	E	L	S	R	I	A	E	C	Y	V	T	A	H	P	N	A	G	L	P	N	A	F
Query Conservation																																														.	.	.	.
Alig confidence																	.	.	.	.	.	.	.																							.	.	.	.																													.	.	.	.
Template Conservation																	.	.	.	.	.	.	.																																																							.	.	.	.
Template Sequence		R	V	P	V	L	I	G	T	G	G	T	N	A	R	E	.	.	.	.	.	.	.	T	I	E	L	S	Q	H	A	Q	Q	A	G	A	D	G	I	V	V	I	N	P	Y	Y	W	K	V	S	E	A	N	L	I	R	Y	F	E	Q	V	A	D	S	V	T	L	P	V	M	L	Y	N	F	P	A	L	.	.	.	.
Template Known Secondary structure		S	S								S	S					.	.	.	.	.	.	.												T		S								S	S	S																	T		S	S											.	.	.	.
Template Predicted Secondary structure																	.	.	.	.	.	.	.																																																							.	.	.	.
Template SS confidence
		82	.	.	.	.	.	.	.	90	.	.	.	.	.	.								.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150
		282	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.
Predicted Secondary structure
Query SS confidence
Query Sequence		G	E	Y	D	L	D	A	D	T	M	A	K	Q	I	R	E	W	A	Q	A	G	F	L	N	I	V	G	G	C	C	G	T	T	P	Q	H	I	A	A	M	S	R	A	V	E	G	L	A	P	R	K	L	P	E	I	P	V	A	C	R	L	S	G	L	E	P	L	N	I	G	E	D	S	L	F	V	N	V	G	E
Query Conservation
Alig confidence																		.	.	.	.	.																																.	.	.	.	.
Template Conservation																		.	.	.	.	.																																.	.	.	.	.
Template Sequence		T	G	Q	D	L	T	P	A	L	V	K	T	L	A	D	S	.	.	.	.	.	R	S	N	I	I	G	I	D	T	I	D	S	V	A	H	L	R	S	M	I	H	T	V	K	G	A	H	P	H	F	T	.	.	.	.	.	V	L	C	G	Y	D	D	H	L	F	N	T	L	L	L	G	G	D	G	A	I	S	A
Template Known Secondary structure			S	S														.	.	.	.	.		T	T								S																	T	T		B	.	.	.	.	.				S	S	G	G	G							T	T							G
Template Predicted Secondary structure																		.	.	.	.	.																																.	.	.	.	.
Template SS confidence
		151	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.						.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.						.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220
		362	.	.	.			.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.
Predicted Secondary structure						.	.
Query SS confidence						.	.
Query Sequence		R	T	N	V	.	.	T	G	S	A	K	F	K	R	L	I	K	E	E	K	Y	S	E	A	L	D	V
Query Conservation						.	.
Alig confidence						.	.
Template Conservation
Template Sequence		S	G	N	F	A	P	Q	V	S	V	N	L	L	K	A	W	R	D	G	D	V	A	K	A	A	G	Y
Template Known Secondary structure		G	G	T	T															T
Template Predicted Secondary structure
Template SS confidence
		222	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions