Job Description P13009 Confidence 95.38% Date Thu Jan 5 11:33:23 GMT 2012 Rank 58 Aligned Residues 217 % Identity 17% Template c3eb2A_ PDB info PDB header:lyase Chain: A: PDB Molecule:putative dihydrodipicolinate synthetase; PDBTitle: crystal structure of dihydrodipicolinate synthase from2 rhodopseudomonas palustris at 2.0a resolution Resolution 2.04 Å

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		128	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180						.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.
Predicted Secondary structure																																																							.	.	.	.	.
Query SS confidence																																																							.	.	.	.	.
Query Sequence		Y	V	A	G	V	L	G	P	T	N	R	T	A	S	I	S	P	D	V	N	D	P	A	F	R	N	I	T	F	D	G	L	V	A	A	Y	R	E	S	T	K	A	L	V	E	G	G	A	D	L	I	L	I	.	.	.	.	.	E	T	V	F	D	T	L	N	A	K	A	A	V	F	A	V	K	T	E	F	E	A
Query Conservation																																																							.	.	.	.	.
Alig confidence													.	.	.	.	.	.	.	.	.	.	.	.							.	.	.	.																					.	.	.	.	.														.	.
Template Conservation													.	.	.	.	.	.	.	.	.	.	.	.							.	.	.	.																																							.	.
Template Sequence		V	F	P	Y	L	V	S	P	V	D	A	.	.	.	.	.	.	.	.	.	.	.	.	E	G	R	V	R	A	.	.	.	.	D	V	M	G	R	L	C	D	D	L	I	Q	A	G	V	H	G	L	T	P	L	G	S	T	G	E	F	A	Y	L	G	T	A	Q	R	E	A	V	.	.	V	R	A	T	I	E	A
Template Known Secondary structure					B					B		T	.	.	.	.	.	.	.	.	.	.	.	.	T	S		B			.	.	.	.													T	T		S		B	B	T	T	S	G	G	G	T	G	G	G										.	.
Template Predicted Secondary structure													.	.	.	.	.	.	.	.	.	.	.	.							.	.	.	.																																							.	.
Template SS confidence
		8	.	10	.	.	.	.	.	.	.	.													.	20	.	.	.	.					.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.			.	.	.	.	.	.	.
		203	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.						.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.
Predicted Secondary structure																																													.	.	.	.	.
Query SS confidence																																													.	.	.	.	.
Query Sequence		L	G	V	E	L	P	I	M	I	S	G	T	I	T	D	A	S	G	R	T	L	S	G	Q	T	T	E	A	F	Y	N	S	L	R	H	A	E	A	L	T	F	G	L	.	.	.	.	.	N	C	A	L	G	P	D	E	L	R	Q	Y	V	Q	E	L	S	R	I	A	E	C	Y	V	T	A	H	P	N	A	G	L
Query Conservation																																													.	.	.	.	.
Alig confidence																				.	.	.	.	.	.	.																			.	.	.	.	.			.
Template Conservation																				.	.	.	.	.	.	.																										.
Template Sequence		A	Q	R	R	V	P	V	V	A	G	V	A	S	T	S	V	A	D	.	.	.	.	.	.	.	A	V	A	Q	A	K	L	Y	E	K	L	G	A	D	G	I	L	A	I	L	E	A	Y	F	P	.	L	K	D	A	Q	I	E	S	Y	F	R	A	I	A	D	A	V	E	I	P	V	V	I	Y	T	N	P	Q	F
Template Known Secondary structure			T	T	S	S		B							S	S				.	.	.	.	.	.	.												T		S									S	S		.																		S	S								T	T	T
Template Predicted Secondary structure																				.	.	.	.	.	.	.																										.
Template SS confidence
		70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.								.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.		.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.
		278	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350					.	.	.
Predicted Secondary structure																																																																											.	.	.	.
Query SS confidence																																																																											.	.	.	.
Query Sequence		P	N	A	F	G	E	Y	D	L	D	A	D	T	M	A	K	Q	I	R	E	W	A	Q	A	G	F	L	N	I	V	G	G	C	C	G	T	T	P	Q	H	I	A	A	M	S	R	A	V	E	G	L	A	P	R	K	L	P	E	I	P	V	A	C	R	L	S	G	L	E	P	L	N	I	.	.	.	.	G	E	D
Query Conservation																																																																											.	.	.	.
Alig confidence		.	.	.	.								.	.	.	.																	.																		.	.	.	.	.	.	.	.	.	.															.	.	.	.
Template Conservation		.	.	.	.								.	.	.	.																	.																		.	.	.	.	.	.	.	.	.	.
Template Sequence		.	.	.	.	Q	R	S	D	L	T	L	.	.	.	.	D	V	I	A	R	L	A	E	H	P	R	I	R	Y	I	K	.	D	A	S	T	N	T	G	R	L	L	S	I	I	N	R	C	G	.	.	.	.	.	.	.	.	.	.	D	A	L	Q	V	F	S	A	S	A	H	I	P	A	A	V	M	L	I	G	G
Template Known Secondary structure		.	.	.	.		S	S					.	.	.	.								T	S	T	T						.			S	S													G	.	.	.	.	.	.	.	.	.	.	G	G	S						T	T	S								T	T
Template Predicted Secondary structure		.	.	.	.								.	.	.	.																	.																		.	.	.	.	.	.	.	.	.	.
Template SS confidence
						142	.	.	.	.	.	.					.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.		.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.											.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.
		354	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		S	L	F	V	N	V	G	E	R	T	N	V	T	G	S	A	K	F	K	R	L	I	K	E	E	K	Y	S	E	A	L	D	V	A	R	Q
Query Conservation
Alig confidence
Template Conservation
Template Sequence		V	G	W	M	A	G	P	A	C	I	A	P	R	Q	S	V	A	L	Y	E	L	C	K	A	Q	R	W	D	E	A	L	M	L	Q	R	K
Template Known Secondary structure							G	G	G	G	T														T	T
Template Predicted Secondary structure
Template SS confidence
		203	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions