Job Description P13009 Confidence 95.69% Date Thu Jan 5 11:33:23 GMT 2012 Rank 53 Aligned Residues 272 % Identity 13% Template c3e96B_ PDB info PDB header:lyase Chain: B: PDB Molecule:dihydrodipicolinate synthase; PDBTitle: crystal structure of dihydrodipicolinate synthase from2 bacillus clausii Resolution 1.80 Å

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		128	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180						.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.
Predicted Secondary structure																																																							.	.	.	.	.
Query SS confidence																																																							.	.	.	.	.
Query Sequence		Y	V	A	G	V	L	G	P	T	N	R	T	A	S	I	S	P	D	V	N	D	P	A	F	R	N	I	T	F	D	G	L	V	A	A	Y	R	E	S	T	K	A	L	V	E	G	G	A	D	L	I	L	I	.	.	.	.	.	E	T	V	F	D	T	L	N	A	K	A	A	V	F	A	V	K	T	E	F	E	A
Query Conservation																																																							.	.	.	.	.
Alig confidence														.	.	.	.	.	.	.	.	.	.	.							.	.	.	.																					.	.	.	.	.														.	.
Template Conservation														.	.	.	.	.	.	.	.	.	.	.							.	.	.	.																																							.	.
Template Sequence		I	S	G	I	P	I	T	P	F	R	K	S	.	.	.	.	.	.	.	.	.	.	.	D	G	S	I	D	W	.	.	.	.	H	H	Y	K	E	T	V	D	R	I	V	D	N	G	I	D	V	I	V	P	C	G	N	T	S	E	F	Y	A	L	S	L	E	E	A	K	E	E	.	.	V	R	R	T	V	E	Y
Template Known Secondary structure										B		T	T	.	.	.	.	.	.	.	.	.	.	.	T			B			.	.	.	.												T	T	T						T	T	S	T	T	T	T	G	G	G	S									.	.
Template Predicted Secondary structure														.	.	.	.	.	.	.	.	.	.	.							.	.	.	.																																							.	.
Template SS confidence
		15	.	.	.	.	20	.	.	.	.	.	.												.	.	.	30	.	.					.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70			.	.	.	.	.	.	.
		203	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.					250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.
Predicted Secondary structure																																																	.	.	.	.
Query SS confidence																																																	.	.	.	.
Query Sequence		L	G	V	E	L	P	I	M	I	S	G	T	I	T	D	A	S	G	R	T	L	S	G	Q	T	T	E	A	F	Y	N	S	L	R	H	A	E	A	L	T	F	G	L	N	C	A	L	.	.	.	.	G	P	D	E	L	R	Q	Y	V	Q	E	L	S	R	I	A	E	C	Y	V	T	A	H	P	N	A	G	L	P
Query Conservation																																																	.	.	.	.
Alig confidence															.					.	.	.	.	.	.	.																							.	.	.	.																											.	.	.
Template Conservation															.					.	.	.	.	.	.	.																																																					.	.	.
Template Sequence		V	H	G	R	A	L	V	V	A	G	I	G	Y	.	A	T	S	T	.	.	.	.	.	.	.	A	I	E	L	G	N	A	A	K	A	A	G	A	D	A	V	M	I	H	M	P	I	H	P	Y	V	T	A	G	G	V	Y	A	Y	F	R	D	I	I	E	A	L	D	F	P	S	L	V	Y	F	K	D	.	.	.
Template Known Secondary structure			T	T	S	S								S	.	S				.	.	.	.	.	.	.												T		S										S																				S									.	.	.
Template Predicted Secondary structure															.					.	.	.	.	.	.	.																																																					.	.	.
Template SS confidence
		78	.	80	.	.	.	.	.	.	.	.	.	90		.	.	.	.								.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.
		279	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.				.	.	.
Predicted Secondary structure																																																																												.	.	.
Query SS confidence																																																																												.	.	.
Query Sequence		N	A	F	G	E	Y	D	L	D	A	D	T	M	A	K	Q	I	R	E	W	A	Q	A	G	F	L	N	I	V	G	G	C	C	G	T	T	P	Q	H	I	A	A	M	S	R	A	V	E	G	L	A	P	R	K	L	P	E	I	P	V	A	C	R	L	S	G	L	E	P	L	N	I	G	E	.	.	.	D	S	L
Query Conservation																																																																												.	.	.
Alig confidence		.	.	.	.	.										.	.	.	.																		.												.	.	.	.	.	.	.	.																				.	.	.
Template Conservation		.	.	.	.	.										.	.	.	.																		.												.	.	.	.	.	.	.	.
Template Sequence		.	.	.	.	.	P	E	I	S	D	R	V	L	V	.	.	.	.	D	L	A	P	L	Q	N	L	V	G	V	K	Y	A	I	N	D	.	L	P	R	F	A	K	V	V	R	S	I	.	.	.	.	.	.	.	.	P	E	E	H	Q	I	A	W	I	C	G	T	A	E	K	W	A	P	F	F	W	H	A	G	A
Template Known Secondary structure		.	.	.	.	.	T	T	S		T					.	.	.	.			T	T		T	T											.									T	T	S	.	.	.	.	.	.	.	.		G	G	G							T	T		T	T	T								T
Template Predicted Secondary structure		.	.	.	.	.										.	.	.	.																		.												.	.	.	.	.	.	.	.
Template SS confidence
							147	.	.	150	.	.	.	.	.					.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.		.	.	.	.	.	.	.	180	.	.	.									.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.
		356	.	.	.	360	.	.	.	.	.			.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.
Predicted Secondary structure												.	.																																																																				.
Query SS confidence												.	.																																																																				.
Query Sequence		F	V	N	V	G	E	R	T	N	V	.	.	T	G	S	A	K	F	K	R	L	I	K	E	E	K	Y	S	E	A	L	D	V	A	R	Q	Q	V	E	N	G	A	Q	I	I	D	I	N	M	D	E	G	M	L	D	A	E	A	A	M	V	R	F	L	N	L	I	A	G	E	P	D	I	A	R	V	P	I	M	.
Query Conservation												.	.																																																																				.
Alig confidence												.	.																												.	.	.	.																																					.
Template Conservation																																									.	.	.	.
Template Sequence		K	G	F	T	S	G	L	V	N	L	L	P	Q	K	A	V	E	M	L	E	A	L	R	N	N	D	N	D	A	V	W	R	I	W	E	D	I	V	P	.	.	.	.	F	E	D	L	R	G	K	Y	N	Q	G	N	N	V	V	V	I	K	E	A	M	E	M	L	R	Q	N	A	G	V	T	R	A	P	V	N	E
Template Known Secondary structure							S	G	G	G	T														T	T															.	.	.	.						T	T	T	T	T	T	T	T	T										T	T				B				T	T
Template Predicted Secondary structure																																									.	.	.	.
Template SS confidence
		209	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.					.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.
		433	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		I	D	S	S	K	W	D	V	I	E	K	G	L	K	C	I	Q
Query Conservation
Alig confidence
Template Conservation
Template Sequence		L	S	N	E	D	K	Q	L	V	T	E	L	L	S	S	W	K
Template Known Secondary structure																	T	T
Template Predicted Secondary structure
Template SS confidence
		285	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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