Job Description P13009 Confidence 90.08% Date Thu Jan 5 11:33:23 GMT 2012 Rank 97 Aligned Residues 220 % Identity 16% Template c3dz1A_ PDB info PDB header:lyase Chain: A: PDB Molecule:dihydrodipicolinate synthase; PDBTitle: crystal structure of dihydrodipicolinate synthase from2 rhodopseudomonas palustris at 1.87a resolution Resolution 1.87 Å

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		122	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.							.	.	.	.	.	.	.	.	190	.	.	.	.	.
Predicted Secondary structure																																																														.	.	.	.	.	.
Query SS confidence																																																														.	.	.	.	.	.
Query Sequence		T	P	E	K	P	R	Y	V	A	G	V	L	G	P	T	N	R	T	A	S	I	S	P	D	V	N	D	P	A	F	R	N	I	T	F	D	G	L	V	A	A	Y	R	E	S	T	K	A	L	V	E	G	G	A	D	L	I	L	I	E	.	.	.	.	.	.	T	V	F	D	T	L	N	A	K	A	A	V	F	A
Query Conservation																																																														.	.	.	.	.	.
Alig confidence																			.	.	.	.	.	.	.	.	.	.	.	.							.	.	.	.																						.	.	.	.	.	.
Template Conservation																			.	.	.	.	.	.	.	.	.	.	.	.							.	.	.	.
Template Sequence		T	P	E	A	A	G	T	F	A	I	A	P	T	P	F	H	D	.	.	.	.	.	.	.	.	.	.	.	.	D	G	K	I	D	D	.	.	.	.	V	S	I	D	R	L	T	D	F	Y	A	E	V	G	C	E	G	V	T	V	L	G	I	L	G	E	A	P	K	L	D	A	A	E	A	E	A	V	A	T	R
Template Known Secondary structure			T	T												B		T	.	.	.	.	.	.	.	.	.	.	.	.	T	S		B			.	.	.	.													T	T		S					S	T	G	G	G	T	G	G	G	S
Template Predicted Secondary structure																			.	.	.	.	.	.	.	.	.	.	.	.							.	.	.	.
Template SS confidence
		4	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20													.	.	.	.	.	.					.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.
		196	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.				.	240	.	.	.	.	.	.	.				.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.			.	.	.
Predicted Secondary structure																																													.	.	.										.	.	.																		.	.
Query SS confidence																																													.	.	.										.	.	.																		.	.
Query Sequence		V	K	T	E	F	E	A	L	G	V	E	L	P	I	M	I	S	G	T	I	T	D	A	S	G	R	T	L	S	G	Q	T	T	E	A	F	Y	N	S	L	R	H	A	.	.	.	E	A	L	T	F	G	L	N	C	.	.	.	A	L	G	P	D	E	L	R	Q	Y	V	Q	E	L	S	R	I	.	.	A	E	C
Query Conservation																																													.	.	.										.	.	.																		.	.
Alig confidence						.	.	.	.										.	.	.	.	.	.	.	.	.	.																	.	.	.										.	.	.																		.	.
Template Conservation						.	.	.	.										.	.	.	.	.	.	.	.	.	.
Template Sequence		F	I	K	R	.	.	.	.	A	K	S	X	Q	V	I	V	G	.	.	.	.	.	.	.	.	.	.	V	S	A	P	G	F	A	A	X	R	R	L	A	R	L	S	X	D	A	G	A	A	G	V	X	I	A	P	P	P	S	L	R	T	D	E	Q	I	T	T	Y	F	R	Q	A	T	E	A	I	G	D	D	V
Template Known Secondary structure						.	.	.	.		T	T	S						.	.	.	.	.	.	.	.	.	.				S	S															T		S								T	T			S																	T	T	S
Template Predicted Secondary structure						.	.	.	.										.	.	.	.	.	.	.	.	.	.
Template SS confidence
		68	.	70	.					.	.	.	.	.	.	.	.	80											.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.
		268	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310			.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.
Predicted Secondary structure																																													.	.
Query SS confidence																																													.	.
Query Sequence		Y	V	T	A	H	P	N	A	G	L	P	N	A	F	G	E	Y	D	L	D	A	D	T	M	A	K	Q	I	R	E	W	A	Q	A	G	F	L	N	I	V	G	G	C	.	.	C	G	T	T	P	Q	H	I	A	A	M	S	R	A	V	E	G	L	A	P	R	K	L	P	E	I	P	V	A	C	R	L	S	G	L
Query Conservation																																													.	.
Alig confidence												.	.	.	.																	.	.	.	.	.									.	.																								.	.	.	.	.	.
Template Conservation												.	.	.	.																	.	.	.	.	.																																		.	.	.	.	.	.
Template Sequence		P	W	V	L	Q	D	Y	P	L	T	.	.	.	.	L	S	V	V	X	T	P	K	V	I	R	Q	I	V	X	D	.	.	.	.	.	S	A	S	C	V	X	L	K	H	E	D	W	P	G	L	E	K	I	T	T	L	R	G	F	Q	K	D	G	S	L	R	P	L	.	.	.	.	.	.	S	I	L	C	G	N
Template Known Secondary structure												.	.	.	.																	.	.	.	.	.		S	S									S	S															T	S	S				.	.	.	.	.	.						G
Template Predicted Secondary structure												.	.	.	.																	.	.	.	.	.																																		.	.	.	.	.	.
Template SS confidence
		134	.	.	.	.	.	140	.	.	.					.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.						160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.							.	.	.	.	.	.
		346	.	.	.	350	.	.	.				.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.
Predicted Secondary structure										.	.	.
Query SS confidence										.	.	.
Query Sequence		E	P	L	N	I	G	E	D	.	.	.	S	L	F	V	N	V	G	E	R	T	N	V	T	G	S	A	K	F	K	R	L	I	K	E	E	K	Y	S	E	A	L	D	V
Query Conservation										.	.	.
Alig confidence										.	.	.
Template Conservation
Template Sequence		G	G	L	F	L	D	F	E	X	E	R	G	A	D	G	A	X	T	G	Y	C	F	P	D	X	L	V	D	V	V	K	L	S	K	A	G	Q	R	D	L	A	H	N	L
Template Known Secondary structure		G	G	T	T								T									S														T	T
Template Predicted Secondary structure
Template SS confidence
		199	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions