 |
Job Description | P13009 | Confidence | 54.92% | Date | Thu Jan 5 11:33:23 GMT 2012 |
Rank | 242 | Aligned Residues | 60 |
% Identity | 22% | Template | c3domC_ |
PDB info |
PDB header:transcription | Chain: C: PDB Molecule:rna polymerase ii transcription factor b subunit 2; |
PDBTitle: crystal structure of the complex between tfb5 and the c-terminal2 domain of tfb2
|
Resolution | 2.60 Å |
|
 |
  |   |
1143 | . | . | . | . | . | . | 1150 | . | . | . | . | . | . | . | . | . | 1160 | . | . | . | . | . | . | . | . | . | 1170 | . | |
|
|
|
|
|
|
. | . | . | . | . | |
|
|
|
|
|
. | . | . | 1180 | . | . | . | . | . | . | . | . | . | 1190 | . | . | . | . | . | . | . | . | . | 1200 | . | . | . | . | . | . |
Predicted Secondary structure |   |
|
|  |  |  |  |  |  |  |  |  |  |  |
|  |  |  |  |
|
|  |  |  |
|
|
|
|
|
| . | . | . | . | . | . | . |
|
|
|  |  | . | . | . | . | . | . |  |  |  |  |  |  |  |
|
|
|
|
|  |  |
|
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |
Query SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
. |
. |
. |
. |
. |
. |
|
|
|
|
| . |
. |
. |
. |
. |
. |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Query Sequence |   |
P | E | H | T | E | K | A | T | I | W | E | L | L | E | V | E | K | H | T | G | M | K | L | T | E | S | F | A | M | . |
. |
. |
. |
. |
. |
. |
W | P | G | A | S | . |
. |
. |
. |
. |
. |
V | S | G | W | Y | F | S | H | P | D | S | K | Y | Y | A | V | A | Q | I | Q | R | D | Q | V | E | D | Y | A | R | R |
Query Conservation |   |
|
|   |   |   |   |   |   |
|   |   |
|
|   |   |
|   |   |
|
|
|   |
|
|
|   |   |   |
| . | . | . | . | . | . | . |   |
|
|   |
| . | . | . | . | . | . |   |
|
|   |
|   |   |
|
|   |
|   |
|
|   |
|
|   |
|   |   |
|
|   |   |
|
|
|   |
|
Alig confidence |   |
|
|
|
|
|
|
|
|
|
|
|
| . | . | . |
|
| . |
|
|
|
|
|
|
|
|
|
|
| . | . | . | . | . | . | . |
|
|
|
|
| . | . | . | . | . | . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Template Conservation |   |
  |
|
|   |
|
|
|   |
|
|
|   | . | . | . |
|
| . |   |
|
|   |   |   |   |
|   |
|
|   |   |
|   |
|   |   |   |
|   |   |   |   |   |
|
|   |   |   |
|
|
|
|
|   |   |   |   |
|
|   |
|
|
|   |   |   |
|
|   |   |
|
|   |
|   |
|
|
Template Sequence |   |
P | T | V | V | D | Q | I | R | L | W | Q | L | . |
. |
. |
E | L | . |
D | R | V | I | T | Y | E | G | S | L | Y | S | D | F | E | T | S | Q | E | Y | N | L | L | S | K | Y | A | Q | D | I | G | V | L | L | W | K | D | D | K | K | K | K | F | F | I | S | K | E | G | N | S | Q | V | L | D | F | A | K | R |
Template Known Secondary structure |   |
 |  |  |  |  |  |  |  |  |  |  |  | . | . | . |  |  | . | T | T |
|
|
|
|
|  |  |  |  |
|
|
| S |
|  |  |  |  |  |  |  |  |  |  |  |  |  | T | T |
|  |  |  |  |  | T | T | T | T |  |  |  |  |  | G | G | G |  |  |  |  |  |  |  |  |  |
|
Template Predicted Secondary structure |   |
 |  |  |  |  |  |  |  |  |  |  |  | . | . | . |  |  | . |
|
|  |  |
|
|
|  |  |  |  |
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|  |  |  |  |  |
|
|
|
|  |  |  |  |  |  |
|
|
|  |  |  |  |  |  |  |  |  |
|
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
435 | . | . | . | . | 440 | . | . | . | . | . | . | |
|
|
. | . | |
. | 450 | . | . | . | . | . | . | . | . | . | 460 | . | . | . | . | . | . | . | . | . | 470 | . | . | . | . | . | . | . | . | . | 480 | . | . | . | . | . | . | . | . | . | 490 | . | . | . | . | . | . | . | . | . | 500 | . | . | . | . | . | . | . |
  |
No model constructed - rank, confidence too low
Phyre is for academic use only
Please cite: Protein structure prediction on
the web: a case study using the Phyre server |
Kelley LA and Sternberg MJE. Nature Protocols
4, 363 - 371 (2009) [pdf] [Import into BibTeX] |
  |
|
|