Job Description P13009 Confidence 100.00% Date Thu Jan 5 11:33:23 GMT 2012 Rank 2 Aligned Residues 549 % Identity 29% Template c3bolB_ PDB info PDB header:transferase Chain: B: PDB Molecule:5-methyltetrahydrofolate s-homocysteine PDBTitle: cobalamin-dependent methionine synthase (1-566) from2 thermotoga maritima complexed with zn2+ Resolution 1.85 Å

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		2	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.
Predicted Secondary structure
Query SS confidence
Query Sequence		S	S	K	V	E	Q	L	R	A	Q	L	N	E	R	I	L	V	L	D	G	G	M	G	T	M	I	Q	S	Y	R	L	N	E	A	D	F	R	G	E	R	F	A	D	W	P	C	D	L	K	G	N	N	D	L	L	V	L	S	K	P	E	V	I	A	A	I	H	N	A	Y	F	E	A	G	A	D	I	I	E	T
Query Conservation
Alig confidence																																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		M	R	N	R	R	E	V	S	K	L	L	S	E	R	V	L	L	L	D	G	A	Y	G	T	E	F	M	K	Y	G	Y	D	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	D	L	P	E	E	L	N	I	K	A	P	D	V	V	L	K	V	H	R	S	Y	I	E	S	G	S	D	V	I	L	T
Template Known Secondary structure																							S					G	G	G	T			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	S		G	G	G																				T		S
Template Predicted Secondary structure																																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.																		.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.
		82	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.
Predicted Secondary structure
Query SS confidence
Query Sequence		N	T	F	N	S	T	T	I	A	M	A	D	Y	Q	M	E	S	L	S	A	E	I	N	F	A	A	A	K	L	A	R	A	C	A	D	E	W	T	A	R	T	P	E	K	P	R	Y	V	A	G	V	L	G	P	T	N	R	T	A	S	I	S	P	D	V	N	D	P	A	F	R	N	I	T	F	D	G	L	V	A
Query Conservation
Alig confidence																																							.	.	.	.	.	.	.	.	.																.	.	.	.	.	.	.	.
Template Conservation																																							.	.	.	.	.	.	.	.	.																.	.	.	.	.	.	.	.
Template Sequence		N	T	F	G	A	T	R	M	K	L	R	K	H	G	L	E	D	K	L	D	P	I	V	R	N	A	V	R	I	A	R	R	A	A	G	E	K	.	.	.	.	.	.	.	.	.	L	V	F	G	D	I	G	P	T	G	E	L	P	Y	P	.	.	.	.	.	.	.	.	L	G	S	T	L	F	E	E	F	Y	E
Template Known Secondary structure		S		T	T		S					G	G	G	T		G	G	G																	T	T	S	.	.	.	.	.	.	.	.	.										S			B	T	T	.	.	.	.	.	.	.	.	T	S	S	B
Template Predicted Secondary structure																																							.	.	.	.	.	.	.	.	.																.	.	.	.	.	.	.	.
Template SS confidence
		64	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100										.	.	.	.	.	.	.	.	.	110	.	.	.	.	.									.	.	.	.	120	.	.	.	.	.	.
		162	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	Y	R	E	S	T	K	A	L	V	E	G	G	A	D	L	I	L	I	E	T	V	F	D	T	L	N	A	K	A	A	V	F	A	V	K	T	E	F	E	A	L	G	V	E	L	P	I	M	I	S	G	T	I	T	D	A	S	G	R	T	L	S	G	Q	T	T	E	A	F	Y	N	S	L	R	H	A	E	A	L
Query Conservation
Alig confidence																																								.	.	.	.													.
Template Conservation																																								.	.	.	.													.
Template Sequence		N	F	R	E	T	V	E	I	M	V	E	E	G	V	D	G	I	I	F	E	T	F	S	D	I	L	E	L	K	A	A	V	L	A	A	R	E	V	.	.	.	.	S	R	D	V	F	L	I	A	H	M	T	F	.	D	E	K	G	R	S	L	T	G	T	D	P	A	N	F	A	I	T	F	D	E	L	D	I	D
Template Known Secondary structure														T		S																								.	.	.	.		S	S	S									.		T	T	S			T	T	S												T	S	S		S
Template Predicted Secondary structure																																								.	.	.	.													.
Template SS confidence
		127	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.					.	.	.	.	.	170	.	.	.	.	.	.		.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.
		242	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.
Predicted Secondary structure
Query SS confidence
Query Sequence		T	F	G	L	N	C	A	L	G	P	D	E	L	R	Q	Y	V	Q	E	L	S	R	I	A	E	C	Y	V	T	A	H	P	N	A	G	L	P	N	A	F	G	E	Y	D	L	D	A	D	T	M	A	K	Q	I	R	E	W	A	Q	A	G	F	L	N	I	V	G	G	C	C	G	T	T	P	Q	H	I	A	A	M
Query Conservation
Alig confidence																																							.	.	.	.	.	.	.															.
Template Conservation																																							.	.	.	.	.	.	.															.
Template Sequence		A	L	G	I	N	C	S	L	G	P	E	E	I	L	P	I	F	Q	E	L	S	Q	Y	T	D	K	F	L	V	V	E	P	N	A	G	Y	P	.	.	.	.	.	.	.	L	K	P	H	D	F	A	V	H	I	D	S	Y	Y	.	E	L	G	V	N	I	F	G	G	C	C	G	T	T	P	E	H	V	K	L	F
Template Known Secondary structure							S	S	S														T	T			S												.	.	.	.	.	.	.								T	T						.	T	T	T		S						T	T
Template Predicted Secondary structure																																							.	.	.	.	.	.	.															.
Template SS confidence
		202	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.								.	240	.	.	.	.	.	.	.	.	.	250	.	.		.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.
		322	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.
Predicted Secondary structure
Query SS confidence
Query Sequence		S	R	A	V	E	G	L	A	P	R	K	L	P	E	I	P	V	A	C	R	L	S	G	L	E	P	L	N	I	G	E	D	S	L	F	V	N	V	G	E	R	T	N	V	T	G	S	A	K	F	K	R	L	I	K	E	E	K	Y	S	E	A	L	D	V	A	R	Q	Q	V	E	N	G	A	Q	I	I	D	I	N
Query Conservation
Alig confidence																															.	.	.
Template Conservation																															.	.	.
Template Sequence		R	K	V	L	G	N	R	K	P	L	Q	R	K	K	K	R	I	F	A	V	S	S	P	S	K	L	V	T	F	.	.	.	D	H	F	V	V	I	G	E	R	I	N	P	A	G	R	K	K	L	W	A	E	M	Q	K	G	N	E	E	I	V	I	K	E	A	K	T	Q	V	E	K	G	A	E	V	L	D	V	N
Template Known Secondary structure							S																	S	S					S	.	.	.	S	S											T	T										T	T															T	T		S
Template Predicted Secondary structure																															.	.	.
Template SS confidence
		284	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.				.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360
		402	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.
Predicted Secondary structure
Query SS confidence
Query Sequence		M	D	E	G	M	L	D	A	E	A	A	M	V	R	F	L	N	L	I	A	G	E	P	D	I	A	R	V	P	I	M	I	D	S	S	K	W	D	V	I	E	K	G	L	K	C	I	Q	G	K	G	I	V	N	S	I	S	M	K	E	G	V	D	A	F	I	H	H	A	K	L	L	R	R	Y	G	A	A	V	V
Query Conservation
Alig confidence																							.	.	.																																				.	.
Template Conservation																							.	.	.																																				.	.
Template Sequence		F	G	I	E	S	Q	I	D	V	R	Y	V	E	K	I	V	Q	T	L	P	Y	.	.	.	V	S	N	V	P	L	S	L	D	I	Q	N	V	D	L	T	E	R	A	L	R	A	Y	P	G	R	S	L	F	N	S	A	K	V	D	.	.	E	E	E	L	E	M	K	I	N	L	L	K	K	Y	G	G	T	L	I
Template Known Secondary structure			S	S	G	G	G	S															.	.	.		T		S																				S	S									S		.	.
Template Predicted Secondary structure																							.	.	.																																				.	.
Template SS confidence
		361	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.				.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.			.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.
		482	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.	.	.	.	.	540	.	.	.	.	.	.	.	.	.	550	.	.	.	.	.	.	.	.	.	560	.
Predicted Secondary structure
Query SS confidence
Query Sequence		V	M	A	F	D	E	Q	G	Q	A	D	T	R	A	R	K	I	E	I	C	R	R	A	Y	K	I	L	T	E	E	V	G	F	P	P	E	D	I	I	F	D	P	N	I	F	A	V	A	T	G	I	E	E	H	N	N	Y	A	Q	D	F	I	G	A	C	E	D	I	K	R	E	L	P	H	A	L	I	S	G	G
Query Conservation
Alig confidence								.																					.							.																	.	.	.	.	.															.	.
Template Conservation								.																					.							.																	.	.	.	.	.															.	.
Template Sequence		V	L	L	M	G	K	.	D	V	P	K	S	F	E	E	R	K	E	Y	F	E	K	A	L	K	I	L	.	E	R	H	D	F	S	.	D	R	V	I	F	D	P	G	V	L	P	L	G	A	E	G	.	.	.	.	.	K	P	V	E	V	L	K	T	I	E	F	I	S	S	.	.	K	G	F	N	T	T	V	G
Template Known Secondary structure				S		S	S	.	S				S																.			T	T		T	.	T	S										G	G	G	T		.	.	.	.	.															.	.	T	T			B			B
Template Predicted Secondary structure								.																					.							.																	.	.	.	.	.															.	.
Template SS confidence
		436	.	.	.	440	.		.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.		.	.	.	.	.	.		.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.						.	.	.	.	.	.	490	.	.	.	.	.	.	.			.	.	500	.	.	.	.	.
		562	.	.	.	.	.	.	.	570	.	.	.	.	.	.	.	.	.	580	.	.	.	.	.	.	.	.	.	590	.	.	.	.	.	.	.	.	.	600	.	.	.	.	.	.	.	.	.	610	.	.	.	.	.	.	.	.	.	620
Predicted Secondary structure
Query SS confidence
Query Sequence		V	S	N	V	S	F	S	F	R	G	N	D	P	V	R	E	A	I	H	A	V	F	L	Y	Y	A	I	R	N	G	M	D	M	G	I	V	N	A	G	Q	L	A	I	Y	D	D	L	P	A	E	L	R	D	A	V	E	D	V	I
Query Conservation
Alig confidence								.		.	.	.	.
Template Conservation								.		.	.	.	.
Template Sequence		L	S	N	L	S	F	.	L	.	.	.	.	P	D	R	S	Y	Y	N	T	A	F	L	V	L	G	I	S	K	G	L	S	S	A	I	M	N	P	L	D	E	T	L	M	K	T	L	N	A	T	L	V	I	L	E	K	K	E	L
Template Known Secondary structure		G	G	G	T	T		.		.	.	.	.		S															T	T								T	T															T	T	S	S
Template Predicted Secondary structure								.		.	.	.	.
Template SS confidence
		506	.	.	.	510	.		.					.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.	.	.	.	.	540	.	.	.	.	.	.	.	.	.	550	.	.	.	.	.	.	.	.	.