Job Description P13009 Confidence 30.17% Date Thu Jan 5 11:33:23 GMT 2012 Rank 400 Aligned Residues 129 % Identity 20% Template c2zyfA_ PDB info PDB header:transferase Chain: A: PDB Molecule:homocitrate synthase; PDBTitle: crystal structure of homocitrate synthase from thermus thermophilus2 complexed with magnesuim ion and alpha-ketoglutarate Resolution 2.15 Å

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		164	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.									.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.
Predicted Secondary structure																									.	.	.	.	.	.	.	.
Query SS confidence																									.	.	.	.	.	.	.	.
Query Sequence		R	E	S	T	K	A	L	V	E	G	G	A	D	L	I	L	I	E	T	V	F	D	T	.	.	.	.	.	.	.	.	L	N	A	K	A	A	V	F	A	V	K	T	E	F	E	A	L	G	V	E	L	P	I	M	I	S	G	T	I	T	D	A	S	G	R	T	L	S	G	Q	T	T	E	A	F	Y	N	S	L
Query Conservation																									.	.	.	.	.	.	.	.
Alig confidence																									.	.	.	.	.	.	.	.														.	.	.	.	.	.											.						.	.
Template Conservation																																														.	.	.	.	.	.											.						.	.
Template Sequence		L	D	A	A	K	V	A	V	E	T	G	V	Q	G	I	D	L	L	F	G	T	S	K	G	R	D	I	P	R	I	I	E	E	A	K	E	V	I	A	Y	I	R	E	A	.	.	.	.	.	.	A	P	H	V	E	V	R	F	S	A	.	E	D	T	F	R	.	.	S	E	E	Q	D	L	L	A	V	Y	E	A
Template Known Secondary structure											T	T		S								S																								.	.	.	.	.	.		T	T	S							.	S	S	T	T	T	.	.	S
Template Predicted Secondary structure																																														.	.	.	.	.	.											.						.	.
Template SS confidence
		77	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120							.	.	.	.	.	.	.	.	.	130		.	.	.	.	.			.	.	.	.	140	.	.	.	.	.	.	.
		236	.	.	.	240	.	.	.	.	.	.	.	.	.	250				.	.	.	.	.	.	.	.	.	260	.	.	.	.	.			.	.	.	.	270	.	.	.			.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.
Predicted Secondary structure																	.	.	.																.	.									.	.																																			.
Query SS confidence																	.	.	.																.	.									.	.																																			.
Query Sequence		R	H	A	E	A	L	T	F	G	L	N	C	A	L	G	.	.	.	P	D	E	L	R	Q	Y	V	Q	E	L	S	R	I	A	.	.	E	C	Y	V	T	A	H	P	.	.	N	A	G	L	P	N	A	F	G	E	Y	D	L	D	A	D	T	M	A	K	Q	I	R	E	W	A	Q	A	G	F	L	N	I	V	.
Query Conservation																	.	.	.																.	.									.	.																																			.
Alig confidence																	.	.	.																.	.									.	.				.	.	.	.	.	.	.	.	.	.	.	.											.	.								.
Template Conservation																																																		.	.	.	.	.	.	.	.	.	.	.	.											.	.
Template Sequence		V	A	P	Y	V	D	R	V	G	L	A	D	T	V	G	V	A	T	P	R	Q	V	Y	A	L	V	R	E	V	R	R	V	V	G	P	R	V	D	I	E	F	H	G	H	N	D	T	G	.	.	.	.	.	.	.	.	.	.	.	.	C	A	I	A	N	A	Y	E	A	I	.	.	E	A	G	A	T	H	V	D
Template Known Secondary structure			G	G	G		S							T	T	S																			T	T	T	S							B		T	T	S	.	.	.	.	.	.	.	.	.	.	.	.											.	.		T	T
Template Predicted Secondary structure																																																		.	.	.	.	.	.	.	.	.	.	.	.											.	.
Template SS confidence
		154	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.													.	.	.	.	.	.	.	.	210	.			.	.	.	.	.	.	.	.
								308	.	310	.	.	.	.	.
Predicted Secondary structure		.	.	.	.	.	.
Query SS confidence		.	.	.	.	.	.
Query Sequence		.	.	.	.	.	.	G	G	C	C	G	T	T	P
Query Conservation		.	.	.	.	.	.
Alig confidence		.	.	.	.	.	.
Template Conservation
Template Sequence		T	T	I	L	G	I	G	E	R	N	G	I	T	P
Template Known Secondary structure			B	G	G	G		S	S	T	T		B		B
Template Predicted Secondary structure
Template SS confidence
		220	.	.	.	.	.	.	.	.	.	230	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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