Job Description P13009 Confidence 92.05% Date Thu Jan 5 11:33:23 GMT 2012 Rank 83 Aligned Residues 158 % Identity 20% Template c2y0fD_ PDB info PDB header:oxidoreductase Chain: D: PDB Molecule:4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase; PDBTitle: structure of gcpe (ispg) from thermus thermophilus hb27 Resolution 2.50 Å

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		379	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.					.	.	.	.	.	.	450	.	.	.	.
Predicted Secondary structure																																																																			.	.	.	.
Query SS confidence																																																																			.	.	.	.
Query Sequence		K	Y	S	E	A	L	D	V	A	R	Q	Q	V	E	N	G	A	Q	I	I	D	I	N	M	D	E	G	M	L	D	A	E	A	A	M	V	R	F	L	N	L	I	A	G	E	P	D	I	A	R	V	P	I	M	I	D	S	S	K	W	D	V	I	E	K	.	.	.	.	G	L	K	C	I	Q	G	K	G	I	V
Query Conservation																																																																			.	.	.	.
Alig confidence																					.	.																									.	.																			.	.	.	.
Template Conservation																					.	.																									.	.
Template Sequence		D	V	E	A	T	T	A	Q	V	L	E	L	H	R	A	G	S	E	I	.	.	V	R	L	T	V	N	D	E	E	A	A	K	A	V	P	E	I	K	R	R	L	L	A	E	.	.	G	V	E	V	P	L	V	G	D	F	H	F	N	G	H	L	L	L	R	K	Y	P	K	M	A	E	A	L	D	K	F	R	I
Template Known Secondary structure																T	T		S		.	.							S					T	T											T	.	.	T										S	S																	S
Template Predicted Secondary structure																					.	.																									.	.
Template SS confidence
		36	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.			.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.			.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.
		455	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.																								.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.
Predicted Secondary structure																																								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		N	S	I	S	M	K	E	G	V	D	A	F	I	H	H	A	K	L	L	R	R	Y	G	A	A	V	V	V	M	A	F	D	E	Q	G	Q	A	D	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	T	R	A	R	K	I	E	I	C	R	R	A	Y	K	I	L	T	E	E
Query Conservation																																								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence						.	.	.	.	.	.	.																					.	.						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																	.
Template Conservation						.	.	.	.	.	.	.																					.	.																																													.
Template Sequence		N	P	E	H	.	.	.	.	.	.	.	F	A	E	M	I	R	I	A	M	D	L	G	K	P	V	R	I	G	A	N	.	.	W	G	S	L	D	P	A	L	L	T	E	L	M	D	R	N	A	S	R	P	E	P	K	S	A	H	E	V	V	L	E	A	L	V	E	S	A	V	R	A	Y	E	A	A	.	L	E
Template Known Secondary structure					T	.	.	.	.	.	.	.	T									T	T	T									.	.	G	G	G	S															S	S	S																								.
Template Predicted Secondary structure						.	.	.	.	.	.	.																					.	.																																													.
Template SS confidence
		112	.	.	.								.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.			.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.		180	.
		512	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.	.	.	.	.	540	.	.	.	.	.	.	.	.	.	550	.	.	.	.	.	.	.	.	.	560	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		V	G	F	P	P	E	D	I	I	F	D	P	N	I	F	A	V	A	T	G	I	E	E	H	N	N	Y	A	Q	D	F	I	G	A	C	E	D	I	K	R	E	L	P	H	A	L	I	S	G	G	V
Query Conservation
Alig confidence																.	.	.	.	.	.	.	.	.	.	.																		.
Template Conservation																.	.	.	.	.	.	.	.	.	.	.																		.
Template Sequence		M	G	L	G	E	D	K	L	V	L	S	A	K	V	.	.	.	.	.	.	.	.	.	.	.	S	K	A	R	D	L	V	W	V	Y	R	E	L	A	R	R	T	.	Q	A	P	L	H	L	G	L
Template Known Secondary structure						G	G	G							B	.	.	.	.	.	.	.	.	.	.	.	S	S																.		S		B				B
Template Predicted Secondary structure																.	.	.	.	.	.	.	.	.	.	.																		.
Template SS confidence
		192	.	.	.	.	.	.	.	200	.	.	.	.	.												.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.		.	.	.	.	.	.	.	230

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions