Job Description P13009 Confidence 59.98% Date Thu Jan 5 11:33:23 GMT 2012 Rank 226 Aligned Residues 175 % Identity 13% Template c2hmcA_ PDB info PDB header:structural genomics, unknown function Chain: A: PDB Molecule:dihydrodipicolinate synthase; PDBTitle: the crystal structure of dihydrodipicolinate synthase dapa from2 agrobacterium tumefaciens Resolution 1.90 Å

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		119	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180						.	.	.		.	.	.	.	.	.	190	.	.
Predicted Secondary structure																																																																.	.	.	.	.				.
Query SS confidence																																																																.	.	.	.	.				.
Query Sequence		T	A	R	T	P	E	K	P	R	Y	V	A	G	V	L	G	P	T	N	R	T	A	S	I	S	P	D	V	N	D	P	A	F	R	N	I	T	F	D	G	L	V	A	A	Y	R	E	S	T	K	A	L	V	E	G	G	A	D	L	I	L	I	.	.	.	.	.	E	T	V	.	F	D	T	L	N	A	K	A	A
Query Conservation																																																																.	.	.	.	.				.
Alig confidence																						.	.	.	.	.	.	.	.	.	.	.	.							.	.	.	.																					.	.	.	.	.				.
Template Conservation																						.	.	.	.	.	.	.	.	.	.	.	.							.	.	.	.
Template Sequence		G	X	T	A	S	I	F	S	G	V	I	P	A	L	X	T	P	C	R	Q	.	.	.	.	.	.	.	.	.	.	.	.	D	R	T	P	D	F	.	.	.	.	D	A	L	V	R	K	G	K	E	L	I	A	D	G	X	S	A	V	V	Y	C	G	S	X	G	D	W	P	L	L	T	D	E	Q	R	X	E	G
Template Known Secondary structure		T	T	S			T	T	S					B					B		T	.	.	.	.	.	.	.	.	.	.	.	.	T	S	S	B			.	.	.	.													T	T							S	S	G	G	G	T	G	G	G	S
Template Predicted Secondary structure																						.	.	.	.	.	.	.	.	.	.	.	.							.	.	.	.
Template SS confidence
		0	.	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.													20	.	.	.	.	.					.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.
		193	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.						.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.		.	.	.
Predicted Secondary structure																																																									.	.	.	.	.																	.
Query SS confidence																																																									.	.	.	.	.																	.
Query Sequence		V	F	A	V	K	T	E	F	E	A	L	G	V	E	L	P	I	M	I	S	G	T	I	T	D	A	S	G	R	T	L	S	G	Q	T	T	E	A	F	Y	N	S	L	R	H	A	E	A	L	T	F	G	L	N	C	.	.	.	.	.	A	L	G	P	D	E	L	R	Q	Y	V	Q	E	L	S	R	.	I	A	E
Query Conservation																																																									.	.	.	.	.																	.
Alig confidence								.	.	.	.	.	.																	.	.	.	.	.	.	.																					.	.	.	.	.																	.
Template Conservation								.	.	.	.	.	.																	.	.	.	.	.	.	.
Template Sequence		V	E	R	L	V	K	.	.	.	.	.	.	A	G	I	P	V	I	V	G	T	G	A	V	N	T	A	S	.	.	.	.	.	.	.	A	V	A	H	A	V	H	A	Q	K	V	G	A	K	G	L	X	V	I	P	R	V	L	S	R	G	S	V	I	A	A	Q	K	A	H	F	K	A	I	L	S	A	A	P	E
Template Known Secondary structure								.	.	.	.	.	.	T	T										S	S				.	.	.	.	.	.	.												T		S									S	S	S	T	T																S	T	T
Template Predicted Secondary structure								.	.	.	.	.	.																	.	.	.	.	.	.	.
Template SS confidence
		64	.	.	.	.	.							70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.								.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130
		267	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.																																											.	.	.	.	.	.	.	300	.	.	.	.
Predicted Secondary structure																												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		C	Y	V	T	A	H	P	N	A	G	L	P	N	A	F	G	E	Y	D	L	D	A	D	T	M	A	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	K	Q	I	R	E	W	A	Q	A	G	F	L
Query Conservation																												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence													.	.	.	.												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation													.	.	.	.
Template Sequence		I	P	A	V	I	Y	N	S	P	Y	Y	.	.	.	.	G	F	A	T	R	A	D	L	F	F	A	L	R	A	E	H	K	N	L	V	G	F	K	E	F	G	G	P	A	D	X	R	Y	A	A	E	N	I	T	S	R	D	D	E	V	T	L	X	I	G	V	D	T	A	V	V	H	G	F	V	N	C	G	A	T
Template Known Secondary structure		S							B	G	G	G	.	.	.	.	T	B															T	T								S												T	S		S	S	S	S							S	G	G	G								S
Template Predicted Secondary structure													.	.	.	.
Template SS confidence
		131	.	.	.	.	.	.	.	.	140	.					.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.
		305	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		N	I	V	G	G	C	C	G	T	T	P	Q	H	I	A	A	M	S	R	A	V	E
Query Conservation
Alig confidence
Template Conservation
Template Sequence		G	A	I	T	G	I	G	N	V	L	P	K	E	V	I	H	L	C	K	L	S	Q
Template Known Secondary structure						S	G	G	G	T	S
Template Predicted Secondary structure
Template SS confidence
		207	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions