Job Description P13009 Confidence 85.38% Date Thu Jan 5 11:33:23 GMT 2012 Rank 118 Aligned Residues 238 % Identity 13% Template c1ypxA_ PDB info PDB header:transferase Chain: A: PDB Molecule:putative vitamin-b12 independent methionine synthase family PDBTitle: crystal structure of the putative vitamin-b12 independent methionine2 synthase from listeria monocytogenes, northeast structural genomics3 target lmr13 Resolution 2.60 Å

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		62	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.																		.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.
Predicted Secondary structure																																.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		E	V	I	A	A	I	H	N	A	Y	F	E	A	G	A	D	I	I	E	T	N	T	F	N	S	T	T	I	A	M	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	A	D	Y	Q	M	E	S	L	S	A	E	I	N	F	A	A	A	K	L	A	R	A	C	A	D	E	W	T	A	R	T	P	E
Query Conservation																																.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																																.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.													.	.	.	.	.								.	.	.	.	.	.
Template Conservation																																																													.	.	.	.	.								.	.	.	.	.	.
Template Sequence		T	E	I	K	Y	I	V	E	K	Q	K	E	V	G	L	K	S	I	T	D	G	E	F	R	R	W	H	F	D	F	L	E	N	L	D	G	V	E	G	Y	S	V	K	I	T	G	P	I	D	F	T	T	H	P	F	I	E	D	F	.	.	.	.	.	I	F	L	K	E	A	V	.	.	.	.	.	.	G	D	N
Template Known Secondary structure															T		S					T	T	T	T								T	T	S																	S			T						.	.	.	.	.								.	.	.	.	.	.		S	S
Template Predicted Secondary structure																																																													.	.	.	.	.								.	.	.	.	.	.
Template SS confidence
		44	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.						.	.	.	.	.	.	.							110	.	.
		125	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.		.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.													190	.
Predicted Secondary structure																																		.																																		.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																		.																																		.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		K	P	R	Y	V	A	G	V	L	G	P	T	N	R	T	A	S	I	S	P	D	V	N	D	P	A	F	R	N	I	T	F	.	D	G	L	V	A	A	Y	R	E	S	T	K	A	L	V	E	G	G	A	D	L	I	L	I	E	T	V	F	D	T	L	N	A	.	.	.	.	.	.	.	.	.	.	.	.	K	A
Query Conservation																																		.																																		.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence								.																										.																											.							.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation								.																																																					.
Template Sequence		H	V	A	K	Q	T	.	I	P	S	P	A	X	L	H	Y	R	G	D	I	E	Y	Q	P	Y	L	D	D	A	E	K	F	A	N	D	L	A	T	A	Y	Q	K	A	I	Q	A	F	Y	D	A	G	C	R	Y	L	Q	L	D	D	.	T	S	W	S	Y	L	C	S	D	E	G	F	D	P	E	T	L	Q	E	T
Template Known Secondary structure		S						.				T											S																												T	T									.						T	T	S					S	T	T	T
Template Predicted Secondary structure								.																																																					.
Template SS confidence
		131	.	.	.	.	.		.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.		.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.
		192	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	V	F	A	V	K	T	E	F	E	A	L	G	V	E	L	P	I	M	I	S	G	T	I	T	D	A	S	G	R	T	L	S	G	Q	T	T	E	A	F	Y	N	S	L	R	H	A	E	A	L	T	F	G	L	N	C	A	L	G	P	D	E	L	R	Q	Y	V	Q	E	L	S	R	I	A	E	C	Y	V	T	A
Query Conservation
Alig confidence																														.	.	.	.	.	.	.	.	.																								.	.	.	.	.	.
Template Conservation																														.	.	.	.	.	.	.	.	.																								.	.	.	.	.	.
Template Sequence		Y	K	N	L	I	N	E	A	I	K	H	K	P	A	D	X	V	I	T	X	H	I	C	R	G	G	Y	G	.	.	.	.	.	.	.	.	.	P	V	A	E	T	L	F	G	K	L	N	I	D	G	F	F	L	E	Y	D	N	E	R	.	.	.	.	.	.	F	A	P	L	K	Y	V	T	R	P	D	L	K	I
Template Known Secondary structure										T	T	T			T	T													S	.	.	.	.	.	.	.	.	.	G	G	G					T	T				S								S			.	.	.	.	.	.			T	T						T	T
Template Predicted Secondary structure																														.	.	.	.	.	.	.	.	.																								.	.	.	.	.	.
Template SS confidence
		217	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.										.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.							.	.	270	.	.	.	.	.	.	.	.	.	280	.
		272	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.			.	.	.	.	310	.	.	.	.	.	.	.						.	.	320	.	.	.	.	.	.	.	.	.	330
Predicted Secondary structure																																				.	.													.	.	.	.	.
Query SS confidence																																				.	.													.	.	.	.	.
Query Sequence		H	P	N	A	G	L	P	N	A	F	G	E	Y	D	L	D	A	D	T	M	A	K	Q	I	R	E	W	A	Q	A	G	F	L	N	.	.	I	V	G	G	C	C	G	T	T	P	Q	H	.	.	.	.	.	I	A	A	M	S	R	A	V	E	G	L	A	P
Query Conservation																																				.	.													.	.	.	.	.
Alig confidence				.	.									.																						.	.													.	.	.	.	.
Template Conservation				.	.									.
Template Sequence		V	L	.	.	G	L	I	T	S	K	T	G	.	E	E	D	E	A	A	I	K	A	R	I	E	E	A	S	E	I	V	P	L	S	Q	L	R	L	S	P	Q	C	G	F	A	T	E	E	E	Q	W	D	K	L	R	Y	V	V	R	L	A	N	D	I	W	G
Template Known Secondary structure				.	.					S	S	S		.				S														S		G	G	G						S	S																							S
Template Predicted Secondary structure				.	.									.
Template SS confidence
		295	.			.	.	.	300	.	.	.	.		.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions