Phyre 2 alignment of P13009 with c1jpkA

Job Description P13009
Confidence 40.00% Date Thu Jan 5 11:33:23 GMT 2012

Rank 317 Aligned Residues 250

% Identity 15% Template c1jpkA_

PDB info PDB header:lyase Chain: A: PDB Molecule:uroporphyrinogen decarboxylase; PDBTitle: gly156asp mutant of human urod, human uroporphyrinogen iii2 decarboxylase

Resolution 2.20 Å

	Insertion relative to template
	Deletion relative to template
	Catalytic residue from the CSA

Detailed help on interpreting your alignment

	58	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.		.	.	.	.	.	.	80	.	.	.	.																										.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.
Predicted Secondary structure																	.												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																	.												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence	L	S	K	P	E	V	I	A	A	I	H	N	A	Y	F	E	.	A	G	A	D	I	I	E	T	N	T	F	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	N	S	T	T	I	A	M	A	D	Y	Q	M	E	S	L	S	A	E	I	N	F	A	A	A	K	L	A
Query Conservation																	.												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																	.												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence	C	R	S	P	E	A	C	C	E	L	T	L	Q	P	L	R	R	F	P	L	D	A	A	I	I	F	S	D	I	L	V	V	P	Q	A	L	G	M	E	V	T	M	V	P	G	K	G	P	S	F	P	E	P	L	R	E	E	Q	D	L	E	R	L	R	D	P	E	V	V	A	S	E	L	G	Y	V	F	Q	A	I
Template Known Secondary structure	S	S																S			S								T	T						T	T						B	T	T	T	B	S			S	S				S	G	G	G	G	G	G	S			G	G	G					T
Template Predicted Secondary structure
Template SS confidence
	59	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.

	112	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.														.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.
Predicted Secondary structure																																				.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																				.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence	R	A	C	A	D	E	W	T	A	R	T	P	E	K	P	R	Y	V	A	G	V	L	G	P	T	N	R	T	A	S	I	S	P	D	V	.	.	.	.	.	.	.	.	.	.	.	.	.	N	D	P	A	F	R	N	I	T	F	D	G	L	V	A	A	Y	R	E	S	T	K	A	L	V	E	G	G	A	D	L	I
Query Conservation																																				.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence													.	.	.	.																				.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation													.	.	.	.
Template Sequence	T	L	T	R	Q	R	L	A	G	R	V	P	.	.	.	.	L	I	G	F	A	D	A	P	W	T	L	M	T	Y	M	V	E	G	G	G	S	S	T	M	A	Q	A	K	R	W	L	Y	Q	R	P	Q	A	S	H	Q	L	L	R	I	L	T	D	A	L	V	P	Y	L	V	G	Q	V	V	A	G	A	Q	A	L
Template Known Secondary structure								T	T	S	S		.	.	.	.																		S	S			S	S																																				T	T		S
Template Predicted Secondary structure													.	.	.	.
Template SS confidence
	139	140	.	.	.	.	.	.	.	.	.	150					.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.

	179	180	.	.	.	.													.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.
Predicted Secondary structure							.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence							.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence	L	I	E	T	V	F	.	.	.	.	.	.	.	.	.	.	.	.	D	T	L	N	A	K	A	A	V	F	A	V	K	T	E	F	E	A	L	G	V	E	L	P	I	M	I	S	G	T	I	T	D	A	S	G	R	T	L	S	G	Q	T	T	E	A	F	Y	N	S	L	R	H	A	E	A	L	T	F	G	L	N
Query Conservation							.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence							.	.	.	.	.	.	.	.	.	.	.	.																														.							.	.	.	.	.	.	.	.	.	.
Template Conservation																																																.							.	.	.	.	.	.	.	.	.	.
Template Sequence	Q	L	F	E	S	H	A	G	H	L	G	P	Q	L	F	N	K	F	A	L	P	Y	I	R	D	V	A	K	Q	V	K	A	R	L	R	E	A	G	L	A	P	V	P	M	I	I	F	.	A	K	D	G	H	F	.	.	.	.	.	.	.	.	.	.	A	L	E	E	L	A	Q	A	G	Y	E	V	V	G	L	D
Template Known Secondary structure					T	T	G	G	G	S									T																		T	T										.		T	T		G	G	.	.	.	.	.	.	.	.	.	.	G					T	T	S	S		S
Template Predicted Secondary structure																																																.							.	.	.	.	.	.	.	.	.	.
Template SS confidence
	215	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.		.	.	.	.	.	.											.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.

	247	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.				.	.	.	.	310	.	.					.	.	.	.	.	.	.
Predicted Secondary structure																																																												.	.	.								.	.	.	.
Query SS confidence																																																												.	.	.								.	.	.	.
Query Sequence	C	A	L	G	P	D	E	L	R	Q	Y	V	Q	E	L	S	R	I	A	E	C	Y	V	T	A	H	P	N	A	G	L	P	N	A	F	G	E	Y	D	L	D	A	D	T	M	A	K	Q	I	R	E	W	A	Q	A	G	F	L	N	.	.	.	I	V	G	G	C	C	G	.	.	.	.	T	T	P	Q	H	I	A
Query Conservation																																																												.	.	.								.	.	.	.
Alig confidence														.	.	.	.	.												.	.	.	.	.	.																							.		.	.	.								.	.	.	.
Template Conservation														.	.	.	.	.												.	.	.	.	.	.																							.
Template Sequence	W	T	V	A	P	K	K	A	R	E	C	V	G	.	.	.	.	.	K	T	V	T	L	Q	G	N	L	D	P	.	.	.	.	.	.	C	A	L	Y	A	S	E	E	E	I	G	Q	L	V	K	Q	M	L	D	D	F	G	.	P	H	R	Y	I	A	N	L	G	H	G	L	Y	P	D	M	D	P	E	H	V	G
Template Known Secondary structure	T	T	S											.	.	.	.	.	S	S	S								G	.	.	.	.	.	.	G	G	G	G	S																		.	S	S	S						S	S				T	T
Template Predicted Secondary structure														.	.	.	.	.												.	.	.	.	.	.																							.
Template SS confidence
	284	.	.	.	.	.	290	.	.	.	.	.	.						.	.	.	300	.	.	.	.	.	.	.							.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.		330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.

	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence	A	M	S	R	A	V	E	G	L	A	P	R	K	L	P
Query Conservation
Alig confidence
Template Conservation
Template Sequence	A	F	V	D	A	V	H	K	H	S	R	L	L	R	Q
Template Known Secondary structure													T	T
Template Predicted Secondary structure
Template SS confidence
	352	.	.	.	.	.	.	.	360	.	.	.	.	.	.

Download:

Text version

No model constructed - rank, confidence too low

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server

Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]

© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys
Disclaimer
Terms and Conditions