Job Description P0AC78 Confidence 1.57% Date Thu Jan 5 11:17:29 GMT 2012 Rank 88 Aligned Residues 161 % Identity 10% Template d1iwga8 SCOP info Multidrug efflux transporter AcrB transmembrane domain Multidrug efflux transporter AcrB transmembrane domain Multidrug efflux transporter AcrB transmembrane domain Resolution 3.50

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		185	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	A	I	W	C	F	A	M	I	A	A	I	L	P	Y	I	M	L	N	L	G	I	L	G	R	R	Y	K	V	F	M	G	D	A	G	S	T	L	I	G	F	T	V	I	W	I	L	L	E	T	T	Q	G	K	T	H	P	I	S	P	V	T	A	L	W	I	I	A	I	P	L	M	D	M	V	A	I	M	Y	R
Query Conservation
Alig confidence																						.	.	.	.	.	.	.
Template Conservation																						.	.	.	.	.	.	.
Template Sequence		L	Y	A	I	S	L	I	V	V	F	L	C	L	A	A	L	Y	E	S	W	.	.	.	.	.	.	.	S	I	P	F	S	V	M	L	V	V	P	L	G	V	I	G	A	L	L	A	A	T	F	R	G	L	T	N	D	V	Y	F	Q	V	G	L	L	T	T	I	G	L	S	A	K	N	A	I	L	I	V	E	F
Template Known Secondary structure																	T	T		S	S	.	.	.	.	.	.	.	S					G	G	G																T	T			B
Template Predicted Secondary structure																						.	.	.	.	.	.	.
Template SS confidence
		876	.	.	.	880	.	.	.	.	.	.	.	.	.	890	.	.	.	.	.								.	.	.	.	900	.	.	.	.	.	.	.	.	.	910	.	.	.	.	.	.	.	.	.	920	.	.	.	.	.	.	.	.	.	930	.	.	.	.	.	.	.	.	.	940	.	.	.	.	.	.	.	.
		265	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		R	L	R	K	G	M	S	P	F	S	P	D	R	Q	H	I	H	H	L	I	M	R	A	G	F	T	S	R	Q	A	F	V	L	I	T	L	A	A	A	L	L	A	S	I	G	V	L	A	E	Y	S	H	F	V	P	E	W	V	M	L	V	L	F	L	L	A	F	F	L	Y	G	Y	C	I	K	R	A	W	K	V
Query Conservation
Alig confidence																					.	.	.	.	.
Template Conservation																					.	.	.	.	.
Template Sequence		A	K	D	L	M	D	K	E	G	K	G	L	I	E	A	T	L	D	A	.	.	.	.	.	V	R	M	R	L	R	P	I	L	M	T	S	L	A	F	I	L	G	V	M	P	L	V	I	S	T	G	A	G	S	G	A	Q	N	A	V	G	T	G	V	M	G	G	M	V	T	A	T	V	L	A	I	F	F	V	P
Template Known Secondary structure						T	T	S	S				T	T							.	.	.	.	.			T	T																				T	T		S	S	S																				T	T	T	T	S	S	S	S
Template Predicted Secondary structure																					.	.	.	.	.
Template SS confidence
		949	950	.	.	.	.	.	.	.	.	.	960	.	.	.	.	.	.	.						.	.	970	.	.	.	.	.	.	.	.	.	980	.	.	.	.	.	.	.	.	.	990	.	.	.	.	.	.	.	.	.	1000	.	.	.	.	.	.	.	.	.	1010	.	.	.	.	.	.	.	.	.	1020	.	.	.
		345	.	.	.	.	350	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	R	F	I	K	R	V	K	R	R	L	R	R
Query Conservation
Alig confidence
Template Conservation
Template Sequence		V	F	F	V	V	V	R	R	R	F	S	R	K
Template Known Secondary structure		S	S								T	S
Template Predicted Secondary structure
Template SS confidence
		1024	.	.	.	.	.	1030	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions