Secondary structure and disorder prediction

		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60
Sequence		M	N	Q	Q	D	I	E	Q	V	V	K	A	V	L	L	K	M	Q	S	S	D	T	P	S	A	A	V	H	E	M	G	V	F	A	S	L	D	D	A	V	A	A	A	K	V	A	Q	Q	G	L	K	S	V	A	M	R	Q	L	A	I
Secondary structure
SS confidence
Disorder		?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120
Sequence		A	A	I	R	E	A	G	E	K	H	A	R	D	L	A	E	L	A	V	S	E	T	G	M	G	R	V	E	D	K	F	A	K	N	V	A	Q	A	R	G	T	P	G	V	E	C	L	S	P	Q	V	L	T	G	D	N	G	L	T	L
Secondary structure
SS confidence
Disorder																																																					?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180
Sequence		I	E	N	A	P	W	G	V	V	A	S	V	T	P	S	T	N	P	A	A	T	V	I	N	N	A	I	S	L	I	A	A	G	N	S	V	I	F	A	P	H	P	A	A	K	K	V	S	Q	R	A	I	T	L	L	N	Q	A	I	V
Secondary structure
SS confidence
Disorder
Disorder confidence
		.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240
Sequence		A	A	G	G	P	E	N	L	L	V	T	V	A	N	P	D	I	E	T	A	Q	R	L	F	K	F	P	G	I	G	L	L	V	V	T	G	G	E	A	V	V	E	A	A	R	K	H	T	N	K	R	L	I	A	A	G	A	G	N	P
Secondary structure
SS confidence
Disorder
Disorder confidence
		.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300
Sequence		P	V	V	V	D	E	T	A	D	L	A	R	A	A	Q	S	I	V	K	G	A	S	F	D	N	N	I	I	C	A	D	E	K	V	L	I	V	V	D	S	V	A	D	E	L	M	R	L	M	E	G	Q	H	A	V	K	L	T	A	E
Secondary structure
SS confidence
Disorder																																																								?
Disorder confidence
		.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360
Sequence		Q	A	Q	Q	L	Q	P	V	L	L	K	N	I	D	E	R	G	K	G	T	V	S	R	D	W	V	G	R	D	A	G	K	I	A	A	A	I	G	L	K	V	P	Q	E	T	R	L	L	F	V	E	T	T	A	E	H	P	F	A	V
Secondary structure
SS confidence
Disorder																								?
Disorder confidence
		.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420
Sequence		T	E	L	M	M	P	V	L	P	V	V	R	V	A	N	V	A	D	A	I	A	L	A	V	K	L	E	G	G	C	H	H	T	A	A	M	H	S	R	N	I	E	N	M	N	Q	M	A	N	A	I	D	T	S	I	F	V	K	N	G
Secondary structure
SS confidence
Disorder
Disorder confidence
		.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.
Sequence		P	C	I	A	G	L	G	L	G	G	E	G	W	T	T	M	T	I	T	T	P	T	G	E	G	V	T	S	A	R	T	F	V	R	L	R	R	C	V	L	V	D	A	F	R	I	V
Secondary structure
SS confidence
Disorder																	?	?	?	?	?	?	?	?	?																	?	?	?	?	?	?	?
Disorder confidence

Confidence Key
High(9)											Low (0)

?	Disordered
	Alpha helix
	Beta strand

Domain analysis

Hover over an aligned region to see model and summary info

Please note, only up to the top 20 hits are modelled to reduce computer load

Rank Aligned region

PDB 3haz chain A Region: 21 - 465 Aligned: 433 Modelled: 441 Confidence: 100.0% Identity: 20% PDB header:oxidoreductase Chain: A: PDB Molecule:proline dehydrogenase; PDBTitle: crystal structure of bifunctional proline utilization a2 (puta) protein Phyre2 PDB 2jg7 chain G Region: 1 - 460 Aligned: 453 Modelled: 460 Confidence: 100.0% Identity: 16% PDB header:oxidoreductase Chain: G: PDB Molecule:antiquitin; PDBTitle: crystal structure of seabream antiquitin and elucidation of2 its substrate specificity Phyre2 PDB 3qan chain B Region: 1 - 460 Aligned: 452 Modelled: 460 Confidence: 100.0% Identity: 18% PDB header:oxidoreductase Chain: B: PDB Molecule:1-pyrroline-5-carboxylate dehydrogenase 1; PDBTitle: crystal structure of 1-pyrroline-5-carboxylate dehydrogenase from2 bacillus halodurans Phyre2 PDB 1uzb chain A Region: 18 - 460 Aligned: 437 Modelled: 443 Confidence: 100.0% Identity: 19% Fold: ALDH-like Superfamily: ALDH-like Family: ALDH-like Phyre2 PDB 1a4s chain A Region: 1 - 460 Aligned: 449 Modelled: 455 Confidence: 100.0% Identity: 14% Fold: ALDH-like Superfamily: ALDH-like Family: ALDH-like Phyre2 PDB 3ed6 chain B Region: 1 - 464 Aligned: 454 Modelled: 464 Confidence: 100.0% Identity: 16% PDB header:oxidoreductase Chain: B: PDB Molecule:betaine aldehyde dehydrogenase; PDBTitle: 1.7 angstrom resolution crystal structure of betaine aldehyde2 dehydrogenase (betb) from staphylococcus aureus Phyre2 PDB 3prl chain D Region: 1 - 460 Aligned: 451 Modelled: 460 Confidence: 100.0% Identity: 20% PDB header:oxidoreductase Chain: D: PDB Molecule:nadp-dependent glyceraldehyde-3-phosphate dehydrogenase; PDBTitle: crystal structure of nadp-dependent glyceraldehyde-3-phosphate2 dehydrogenase from bacillus halodurans c-125 Phyre2 PDB 1bxs chain A Region: 1 - 460 Aligned: 451 Modelled: 459 Confidence: 100.0% Identity: 17% Fold: ALDH-like Superfamily: ALDH-like Family: ALDH-like Phyre2 PDB 2o2q chain A Region: 1 - 460 Aligned: 451 Modelled: 460 Confidence: 100.0% Identity: 17% PDB header:oxidoreductase Chain: A: PDB Molecule:formyltetrahydrofolate dehydrogenase; PDBTitle: crystal structure of the c-terminal domain of rat2 10'formyltetrahydrofolate dehydrogenase in complex with nadp Phyre2 PDB 2ve5 chain H Region: 1 - 460 Aligned: 451 Modelled: 456 Confidence: 100.0% Identity: 17% PDB header:oxidoreductase Chain: H: PDB Molecule:betaine aldehyde dehydrogenase; PDBTitle: crystallographic structure of betaine aldehyde2 dehydrogenase from pseudomonas aeruginosa Phyre2 PDB 1euh chain A Region: 1 - 462 Aligned: 450 Modelled: 462 Confidence: 100.0% Identity: 17% Fold: ALDH-like Superfamily: ALDH-like Family: ALDH-like Phyre2 PDB 1o9j chain A Region: 1 - 460 Aligned: 451 Modelled: 459 Confidence: 100.0% Identity: 16% Fold: ALDH-like Superfamily: ALDH-like Family: ALDH-like Phyre2 PDB 3iwk chain B Region: 1 - 465 Aligned: 455 Modelled: 465 Confidence: 100.0% Identity: 21% PDB header:oxidoreductase Chain: B: PDB Molecule:aminoaldehyde dehydrogenase; PDBTitle: crystal structure of aminoaldehyde dehydrogenase 1 from2 pisum sativum (psamadh1) Phyre2 PDB 1o04 chain A Region: 1 - 465 Aligned: 456 Modelled: 465 Confidence: 100.0% Identity: 14% Fold: ALDH-like Superfamily: ALDH-like Family: ALDH-like Phyre2 PDB 2d4e chain B Region: 1 - 460 Aligned: 450 Modelled: 460 Confidence: 100.0% Identity: 19% PDB header:oxidoreductase Chain: B: PDB Molecule:5-carboxymethyl-2-hydroxymuconate semialdehyde PDBTitle: crystal structure of the hpcc from thermus thermophilus hb8 Phyre2 PDB 3rh9 chain A Region: 1 - 459 Aligned: 449 Modelled: 456 Confidence: 100.0% Identity: 14% PDB header:oxidoreductase Chain: A: PDB Molecule:succinate-semialdehyde dehydrogenase (nad(p)(+)); PDBTitle: the crystal structure of oxidoreductase from marinobacter aquaeolei Phyre2 PDB 1ky8 chain A Region: 1 - 460 Aligned: 449 Modelled: 456 Confidence: 100.0% Identity: 17% Fold: ALDH-like Superfamily: ALDH-like Family: ALDH-like Phyre2 PDB 1ag8 chain A Region: 1 - 460 Aligned: 451 Modelled: 460 Confidence: 100.0% Identity: 15% Fold: ALDH-like Superfamily: ALDH-like Family: ALDH-like Phyre2 PDB 3ek1 chain C Region: 1 - 462 Aligned: 452 Modelled: 457 Confidence: 100.0% Identity: 18% PDB header:oxidoreductase Chain: C: PDB Molecule:aldehyde dehydrogenase; PDBTitle: crystal structure of aldehyde dehydrogenase from brucella2 melitensis biovar abortus 2308 Phyre2 PDB 1wnd chain A Region: 1 - 460 Aligned: 449 Modelled: 460 Confidence: 100.0% Identity: 16% Fold: ALDH-like Superfamily: ALDH-like Family: ALDH-like Phyre2 1 c3hazA_ 2 c2jg7G_ 3 c3qanB_ 4 d1uzba_ 5 d1a4sa_ 6 c3ed6B_ 7 c3prlD_ 8 d1bxsa_ 9 c2o2qA_ 10 c2ve5H_ 11 d1euha_ 12 d1o9ja_ 13 c3iwkB_ 14 d1o04a_ 15 c2d4eB_ 16 c3rh9A_ 17 d1ky8a_ 18 d1ag8a_ 19 c3ek1C_ 20 d1wnda_ 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89

Detailed template information

# Template Alignment Coverage 3D Model Confidence % i.d. Template Information

1 c3hazA_ 100.0 20 PDB header:oxidoreductase Chain: A: PDB Molecule:proline dehydrogenase; PDBTitle: crystal structure of bifunctional proline utilization a2 (puta) protein 2 c2jg7G_ 100.0 16 PDB header:oxidoreductase Chain: G: PDB Molecule:antiquitin; PDBTitle: crystal structure of seabream antiquitin and elucidation of2 its substrate specificity 3 c3qanB_ 100.0 18 PDB header:oxidoreductase Chain: B: PDB Molecule:1-pyrroline-5-carboxylate dehydrogenase 1; PDBTitle: crystal structure of 1-pyrroline-5-carboxylate dehydrogenase from2 bacillus halodurans 4 d1uzba_ 100.0 19 Fold:ALDH-like Superfamily:ALDH-like Family:ALDH-like 5 d1a4sa_ 100.0 14 Fold:ALDH-like Superfamily:ALDH-like Family:ALDH-like 6 c3ed6B_ 100.0 16 PDB header:oxidoreductase Chain: B: PDB Molecule:betaine aldehyde dehydrogenase; PDBTitle: 1.7 angstrom resolution crystal structure of betaine aldehyde2 dehydrogenase (betb) from staphylococcus aureus 7 c3prlD_ 100.0 20 PDB header:oxidoreductase Chain: D: PDB Molecule:nadp-dependent glyceraldehyde-3-phosphate dehydrogenase; PDBTitle: crystal structure of nadp-dependent glyceraldehyde-3-phosphate2 dehydrogenase from bacillus halodurans c-125 8 d1bxsa_ 100.0 17 Fold:ALDH-like Superfamily:ALDH-like Family:ALDH-like 9 c2o2qA_ 100.0 17 PDB header:oxidoreductase Chain: A: PDB Molecule:formyltetrahydrofolate dehydrogenase; PDBTitle: crystal structure of the c-terminal domain of rat2 10'formyltetrahydrofolate dehydrogenase in complex with nadp 10 c2ve5H_ 100.0 17 PDB header:oxidoreductase Chain: H: PDB Molecule:betaine aldehyde dehydrogenase; PDBTitle: crystallographic structure of betaine aldehyde2 dehydrogenase from pseudomonas aeruginosa 11 d1euha_ 100.0 17 Fold:ALDH-like Superfamily:ALDH-like Family:ALDH-like 12 d1o9ja_ 100.0 16 Fold:ALDH-like Superfamily:ALDH-like Family:ALDH-like 13 c3iwkB_ 100.0 21 PDB header:oxidoreductase Chain: B: PDB Molecule:aminoaldehyde dehydrogenase; PDBTitle: crystal structure of aminoaldehyde dehydrogenase 1 from2 pisum sativum (psamadh1) 14 d1o04a_ 100.0 14 Fold:ALDH-like Superfamily:ALDH-like Family:ALDH-like 15 c2d4eB_ 100.0 19 PDB header:oxidoreductase Chain: B: PDB Molecule:5-carboxymethyl-2-hydroxymuconate semialdehyde PDBTitle: crystal structure of the hpcc from thermus thermophilus hb8 16 c3rh9A_ 100.0 14 PDB header:oxidoreductase Chain: A: PDB Molecule:succinate-semialdehyde dehydrogenase (nad(p)(+)); PDBTitle: the crystal structure of oxidoreductase from marinobacter aquaeolei 17 d1ky8a_ 100.0 17 Fold:ALDH-like Superfamily:ALDH-like Family:ALDH-like 18 d1ag8a_ 100.0 15 Fold:ALDH-like Superfamily:ALDH-like Family:ALDH-like 19 c3ek1C_ 100.0 18 PDB header:oxidoreductase Chain: C: PDB Molecule:aldehyde dehydrogenase; PDBTitle: crystal structure of aldehyde dehydrogenase from brucella2 melitensis biovar abortus 2308 20 d1wnda_ 100.0 16 Fold:ALDH-like Superfamily:ALDH-like Family:ALDH-like 21 c3ifgH_ not modelled 100.0 19 PDB header:oxidoreductase Chain: H: PDB Molecule:succinate-semialdehyde dehydrogenase (nadp+); PDBTitle: crystal structure of succinate-semialdehyde dehydrogenase from2 burkholderia pseudomallei, part 1 of 2 22 c2w8qA_ not modelled 100.0 16 PDB header:oxidoreductase Chain: A: PDB Molecule:succinate-semialdehyde dehydrogenase, PDBTitle: the crystal structure of human ssadh in complex with ssa. 23 c1t90B_ not modelled 100.0 19 PDB header:oxidoreductase Chain: B: PDB Molecule:probable methylmalonate-semialdehyde PDBTitle: crystal structure of methylmalonate semialdehyde2 dehydrogenase from bacillus subtilis 24 c3r31A_ not modelled 100.0 16 PDB header:oxidoreductase Chain: A: PDB Molecule:betaine aldehyde dehydrogenase; PDBTitle: crystal structure of betaine aldehyde dehydrogenase from agrobacterium2 tumefaciens 25 c3b4wA_ not modelled 100.0 19 PDB header:oxidoreductase Chain: A: PDB Molecule:aldehyde dehydrogenase; PDBTitle: crystal structure of mycobacterium tuberculosis aldehyde dehydrogenase2 complexed with nad+ 26 c3pqaA_ not modelled 100.0 16 PDB header:oxidoreductase Chain: A: PDB Molecule:lactaldehyde dehydrogenase; PDBTitle: crystal structure of glyceraldehyde-3-phosphate dehydrogenase gapn2 from methanocaldococcus jannaschii dsm 2661 27 c3i44A_ not modelled 100.0 19 PDB header:oxidoreductase Chain: A: PDB Molecule:aldehyde dehydrogenase; PDBTitle: crystal structure of aldehyde dehydrogenase from bartonella2 henselae at 2.0a resolution 28 c3k2wD_ not modelled 100.0 18 PDB header:oxidoreductase Chain: D: PDB Molecule:betaine-aldehyde dehydrogenase; PDBTitle: crystal structure of betaine-aldehyde dehydrogenase from2 pseudoalteromonas atlantica t6c 29 c3jz4C_ not modelled 100.0 17 PDB header:oxidoreductase Chain: C: PDB Molecule:succinate-semialdehyde dehydrogenase [nadp+]; PDBTitle: crystal structure of e. coli nadp dependent enzyme 30 c3efvC_ not modelled 100.0 21 PDB header:oxidoreductase Chain: C: PDB Molecule:putative succinate-semialdehyde dehydrogenase; PDBTitle: crystal structure of a putative succinate-semialdehyde dehydrogenase2 from salmonella typhimurium lt2 with bound nad 31 c3rosA_ not modelled 100.0 19 PDB header:oxidoreductase Chain: A: PDB Molecule:nad-dependent aldehyde dehydrogenase; PDBTitle: crystal structure of nad-dependent aldehyde dehydrogenase from2 lactobacillus acidophilus 32 c2hg2A_ not modelled 100.0 16 PDB header:oxidoreductase Chain: A: PDB Molecule:aldehyde dehydrogenase a; PDBTitle: structure of lactaldehyde dehydrogenase 33 c3ju8B_ not modelled 100.0 20 PDB header:oxidoreductase Chain: B: PDB Molecule:succinylglutamic semialdehyde dehydrogenase; PDBTitle: crystal structure of succinylglutamic semialdehyde dehydrogenase from2 pseudomonas aeruginosa. 34 d1bi9a_ not modelled 100.0 16 Fold:ALDH-like Superfamily:ALDH-like Family:ALDH-like 35 d1ez0a_ not modelled 100.0 20 Fold:ALDH-like Superfamily:ALDH-like Family:ALDH-like 36 d1ad3a_ not modelled 100.0 19 Fold:ALDH-like Superfamily:ALDH-like Family:ALDH-like 37 c3k9dD_ not modelled 100.0 27 PDB header:oxidoreductase Chain: D: PDB Molecule:aldehyde dehydrogenase; PDBTitle: crystal structure of probable aldehyde dehydrogenase from listeria2 monocytogenes egd-e 38 c3v4cB_ not modelled 100.0 19 PDB header:oxidoreductase Chain: B: PDB Molecule:aldehyde dehydrogenase (nadp+); PDBTitle: crystal structure of a semialdehyde dehydrogenase from sinorhizobium2 meliloti 1021 39 c3r64A_ not modelled 100.0 21 PDB header:oxidoreductase Chain: A: PDB Molecule:nad dependent benzaldehyde dehydrogenase; PDBTitle: crystal structure of a nad-dependent benzaldehyde dehydrogenase from2 corynebacterium glutamicum 40 c2vroB_ not modelled 100.0 15 PDB header:oxidoreductase Chain: B: PDB Molecule:aldehyde dehydrogenase; PDBTitle: crystal structure of aldehyde dehydrogenase from2 burkholderia xenovorans lb400 41 d1o20a_ not modelled 100.0 18 Fold:ALDH-like Superfamily:ALDH-like Family:ALDH-like 42 c3my7A_ not modelled 100.0 29 PDB header:oxidoreductase Chain: A: PDB Molecule:alcohol dehydrogenase/acetaldehyde dehydrogenase; PDBTitle: the crystal structure of the acdh domain of an alcohol dehydrogenase2 from vibrio parahaemolyticus to 2.25a 43 c3lnsD_ not modelled 100.0 17 PDB header:oxidoreductase Chain: D: PDB Molecule:benzaldehyde dehydrogenase; PDBTitle: benzaldehyde dehydrogenase, a class 3 aldehyde dehydrogenase, with2 bound nadp+ and benzoate adduct 44 d1vlua_ not modelled 100.0 21 Fold:ALDH-like Superfamily:ALDH-like Family:ALDH-like 45 c2h5gA_ not modelled 100.0 16 PDB header:oxidoreductase Chain: A: PDB Molecule:delta 1-pyrroline-5-carboxylate synthetase; PDBTitle: crystal structure of human pyrroline-5-carboxylate synthetase 46 c1vluB_ not modelled 100.0 18 PDB header:oxidoreductase Chain: B: PDB Molecule:gamma-glutamyl phosphate reductase; PDBTitle: crystal structure of gamma-glutamyl phosphate reductase (yor323c) from2 saccharomyces cerevisiae at 2.40 a resolution 47 d1k75a_ not modelled 97.4 15 Fold:ALDH-like Superfamily:ALDH-like Family:L-histidinol dehydrogenase HisD 48 d1y5ea1 not modelled 42.3 13 Fold:Molybdenum cofactor biosynthesis proteins Superfamily:Molybdenum cofactor biosynthesis proteins Family:MogA-like 49 c2yvqA_ not modelled 26.5 13 PDB header:ligase Chain: A: PDB Molecule:carbamoyl-phosphate synthase; PDBTitle: crystal structure of mgs domain of carbamoyl-phosphate2 synthetase from homo sapiens 50 c3iv4A_ not modelled 24.8 6 PDB header:oxidoreductase Chain: A: PDB Molecule:putative oxidoreductase; PDBTitle: a putative oxidoreductase with a thioredoxin fold 51 d1np7a2 not modelled 22.1 10 Fold:Cryptochrome/photolyase, N-terminal domain Superfamily:Cryptochrome/photolyase, N-terminal domain Family:Cryptochrome/photolyase, N-terminal domain 52 c3jtpB_ not modelled 19.2 24 PDB header:protein binding Chain: B: PDB Molecule:adapter protein meca 1; PDBTitle: crystal structure of the c-terminal domain of meca 53 d1a9xa2 not modelled 19.0 15 Fold:Methylglyoxal synthase-like Superfamily:Methylglyoxal synthase-like Family:Carbamoyl phosphate synthetase, large subunit allosteric, C-terminal domain 54 d2g2ca1 not modelled 18.7 14 Fold:Molybdenum cofactor biosynthesis proteins Superfamily:Molybdenum cofactor biosynthesis proteins Family:MogA-like 55 d1wo8a1 not modelled 18.4 10 Fold:Methylglyoxal synthase-like Superfamily:Methylglyoxal synthase-like Family:Methylglyoxal synthase, MgsA 56 d1s7ia_ not modelled 17.1 15 Fold:Ferredoxin-like Superfamily:Dimeric alpha+beta barrel Family:DGPF domain (Pfam 04946) 57 c2is8A_ not modelled 15.5 12 PDB header:structural protein Chain: A: PDB Molecule:molybdopterin biosynthesis enzyme, moab; PDBTitle: crystal structure of the molybdopterin biosynthesis enzyme moab2 (ttha0341) from thermus theromophilus hb8 58 d2j07a2 not modelled 14.0 13 Fold:Cryptochrome/photolyase, N-terminal domain Superfamily:Cryptochrome/photolyase, N-terminal domain Family:Cryptochrome/photolyase, N-terminal domain 59 d1oy0a_ not modelled 13.7 21 Fold:TIM beta/alpha-barrel Superfamily:Phosphoenolpyruvate/pyruvate domain Family:Ketopantoate hydroxymethyltransferase PanB 60 c3labA_ not modelled 12.5 27 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:putative kdpg (2-keto-3-deoxy-6-phosphogluconate) PDBTitle: crystal structure of a putative kdpg (2-keto-3-deoxy-6-2 phosphogluconate) aldolase from oleispira antarctica 61 d1o66a_ not modelled 11.6 18 Fold:TIM beta/alpha-barrel Superfamily:Phosphoenolpyruvate/pyruvate domain Family:Ketopantoate hydroxymethyltransferase PanB 62 c3q3hA_ not modelled 10.7 22 PDB header:transferase Chain: A: PDB Molecule:hmw1c-like glycosyltransferase; PDBTitle: crystal structure of the actinobacillus pleuropneumoniae hmw1c2 glycosyltransferase in complex with udp-glc 63 d1uz5a3 not modelled 9.5 15 Fold:Molybdenum cofactor biosynthesis proteins Superfamily:Molybdenum cofactor biosynthesis proteins Family:MoeA central domain-like 64 d1g99a2 not modelled 8.6 19 Fold:Ribonuclease H-like motif Superfamily:Actin-like ATPase domain Family:Acetokinase-like 65 c3ibpA_ not modelled 8.5 13 PDB header:cell cycle Chain: A: PDB Molecule:chromosome partition protein mukb; PDBTitle: the crystal structure of the dimerization domain of escherichia coli2 structural maintenance of chromosomes protein mukb 66 d1mkza_ not modelled 8.5 15 Fold:Molybdenum cofactor biosynthesis proteins Superfamily:Molybdenum cofactor biosynthesis proteins Family:MogA-like 67 c2pjkA_ not modelled 8.5 15 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:178aa long hypothetical molybdenum cofactor PDBTitle: structure of hypothetical molybdenum cofactor biosynthesis2 protein b from sulfolobus tokodaii 68 c2xigA_ not modelled 8.0 8 PDB header:transcription Chain: A: PDB Molecule:ferric uptake regulation protein; PDBTitle: the structure of the helicobacter pylori ferric uptake2 regulator fur reveals three functional metal binding sites 69 d2e1za2 not modelled 7.7 19 Fold:Ribonuclease H-like motif Superfamily:Actin-like ATPase domain Family:Acetokinase-like 70 c2g4rB_ not modelled 7.3 12 PDB header:biosynthetic protein Chain: B: PDB Molecule:molybdopterin biosynthesis mog protein; PDBTitle: anomalous substructure of moga 71 c2ec4A_ not modelled 7.3 12 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:fas-associated factor 1; PDBTitle: solution structure of the uas domain from human fas-2 associated factor 1 72 c1uz5A_ not modelled 7.2 18 PDB header:molybdopterin biosynthesis Chain: A: PDB Molecule:402aa long hypothetical molybdopterin PDBTitle: the crystal structure of molybdopterin biosynthesis moea2 protein from pyrococcus horikosii 73 d1ydua1 not modelled 7.1 13 Fold:At5g01610-like Superfamily:At5g01610-like Family:At5g01610-like 74 d1hkya_ not modelled 7.1 21 Fold:Hairpin loop containing domain-like Superfamily:Hairpin loop containing domain-like Family:Pan module (APPLE domain) 75 c2vpiA_ not modelled 6.9 14 PDB header:ligase Chain: A: PDB Molecule:gmp synthase; PDBTitle: human gmp synthetase - glutaminase domain 76 d1xxaa_ not modelled 6.5 29 Fold:DCoH-like Superfamily:C-terminal domain of arginine repressor Family:C-terminal domain of arginine repressor 77 c2hw2A_ not modelled 6.5 17 PDB header:transferase Chain: A: PDB Molecule:rifampin adp-ribosyl transferase; PDBTitle: crystal structure of rifampin adp-ribosyl transferase in2 complex with rifampin 78 d2f7wa1 not modelled 6.4 15 Fold:Molybdenum cofactor biosynthesis proteins Superfamily:Molybdenum cofactor biosynthesis proteins Family:MogA-like 79 c1gr0A_ not modelled 6.3 16 PDB header:isomerase Chain: A: PDB Molecule:inositol-3-phosphate synthase; PDBTitle: myo-inositol 1-phosphate synthase from mycobacterium2 tuberculosis in complex with nad and zinc. 80 c3jtoE_ not modelled 6.0 13 PDB header:protein binding Chain: E: PDB Molecule:adapter protein meca 2; PDBTitle: crystal structure of the c-terminal domain of ypbh 81 d1v8da_ not modelled 5.9 14 Fold:TTHA0583/YokD-like Superfamily:TTHA0583/YokD-like Family:Hypothetical protein TT1679 82 c2iirJ_ not modelled 5.9 19 PDB header:transferase Chain: J: PDB Molecule:acetate kinase; PDBTitle: acetate kinase from a hypothermophile thermotoga maritima 83 d2ey4c1 not modelled 5.7 33 Fold:Reductase/isomerase/elongation factor common domain Superfamily:Translation proteins Family:Gar1-like SnoRNP 84 c2hvyB_ not modelled 5.5 33 PDB header:isomerase/biosynthetic protein/rna Chain: B: PDB Molecule:small nucleolar rnp similar to gar1; PDBTitle: crystal structure of an h/aca box rnp from pyrococcus furiosus 85 d2ftsa3 not modelled 5.5 20 Fold:Molybdenum cofactor biosynthesis proteins Superfamily:Molybdenum cofactor biosynthesis proteins Family:MoeA central domain-like 86 c3v4gA_ not modelled 5.4 29 PDB header:dna binding protein Chain: A: PDB Molecule:arginine repressor; PDBTitle: 1.60 angstrom resolution crystal structure of an arginine repressor2 from vibrio vulnificus cmcp6 87 d1ovma2 not modelled 5.3 9 Fold:Thiamin diphosphate-binding fold (THDP-binding) Superfamily:Thiamin diphosphate-binding fold (THDP-binding) Family:Pyruvate oxidase and decarboxylase Pyr module 88 c3rfqC_ not modelled 5.2 23 PDB header:biosynthetic protein Chain: C: PDB Molecule:pterin-4-alpha-carbinolamine dehydratase moab2; PDBTitle: crystal structure of pterin-4-alpha-carbinolamine dehydratase moab22 from mycobacterium marinum 89 d1jx6a_ not modelled 5.2 12 Fold:Periplasmic binding protein-like I Superfamily:Periplasmic binding protein-like I Family:L-arabinose binding protein-like

Binding site prediction

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
If you use the binding site predictions from 3DLigandSite, please also cite:
3DLigandSite: predicting ligand-binding sites using similar structures.
Wass MN, Kelley LA and Sternberg MJ Nucleic Acids Research 38, W469-73 (2010) [PubMed]
© Structural Bioinformatics Group Imperial College London Lawrence Kelley, Benjamin Jefferys Disclaimer Terms and Conditions	Component software Template detection: HHpred 1.51 Secondary structure prediction: Psi-pred 2.5 Disorder prediction: Disopred 2.4 Transmembrane prediction: Memsat_SVM Multi-template modelling and ab initio: Poing 1.0