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Job DescriptionP77445
Confidence100.00%DateThu Jan 5 12:29:23 GMT 2012
Rank29Aligned Residues451
% Identity17%Templatec3jz4C_
PDB info PDB header:oxidoreductaseChain: C: PDB Molecule:succinate-semialdehyde dehydrogenase [nadp+]; PDBTitle: crystal structure of e. coli nadp dependent enzyme
Resolution2.30 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   1........10.........20.........30.........40.........50. ........60.........70........
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Query Sequence  MNQQDIEQVVKAVLLKMQSSDTPSAAVHEMGVFASLDDAVAAAKVAQQGLK. . SVAMRQLAIAAIREAGEKHARDLAELA
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Template Sequence  INGEWLDANNGEAIDVTNPANGDKLGSVPKMGADETRAAIDAANRALPAWRALTAKERATILRNWFNLMMEHQDDLARLM
Template Known Secondary structure  TT

TT


TTT


B
TS
T
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   14.....20.........30.........40.........50.........60.........70.........80.........90...
 
   7980......... 90.........100......... 110.........120.........130.........140.........150...
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Query Sequence  VSETGMGRVED. . KFAKNVAQARGTPGVECLSP. . . QVLTGDNGLTLIENAPWGVVASVTPSTNPAATVINNAISLIAAG
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Template Sequence  TLEQGKPLAEAKGEISYAASFIEWFAEEGKRIYGDTIPGHQADKRLIVIKQPIGVTAAITPWNFPAAMITRKAGPALAAG
Template Known Secondary structure 


GGG




SSTT



SSSTTT
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   94.....100.........110.........120.........130.........140.........150.........160.........170...
 
   154.....160.........170.........180.........190.........200.........210.........220......... 230
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Query Sequence  NSVIFAPHPAAKKVSQRAITLLNQAIVAAGGPENLLVTVANPDIETAQRLFKFPGIGLLVVTGGEAVVEAARKHTN. . . K
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Template Sequence  CTMVLKPASQTPFSALALAELAIR. . . . AGVPAGVFNVVTGSAGAVGNELTSNPLVRKLSFTGSTEIGRQLMEQCAKDIK
Template Known Secondary structure 


TTS....T

TTT

B

TTS
TTTT
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   174.....180.........190....... ..200.........210.........220.........230.........240.........
 
   231........240.........250.........260.........270.........280.........290......... 300.......
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Query Sequence  RLIAAGAGNPPVVVDETADLARAAQSIVKGASFDNNIICADEKVLIVVDSVADELMRLMEGQHAVKLTA. . . EQAQQLQP
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Template Sequence  KVSLELGGNAPFIVFDDADLDKAVEGALASKFRNAGQTCVCANRLYVQDGVYDRFAEKLQQAMSKLHIGDGLDNGVTIGP
Template Known Secondary structure 




TTS
GGGG
STTSGGGTT

BS
TTSTT

B

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   250.........260.........270.........280.........290.........300.........310.........320.........
 
   308.310.........320.........330.........340 .........350.........360.........370.........380.....
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Query Sequence  VLLKNIDERGKGTVSRDWVGRDAGKIAAAIGLK. . VPQETRLLFVETTAEHPFAVTELMMPVLPVVRVANVADAIALAVK
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Template Sequence  LIDEKAVAKVEEHIA. DALEKGARVVCGGKAHERGGNFFQPTILVDVPANAKVSKEETFGPLAPLFRFKDEADVIAQAND
Template Known Secondary structure 
SS.TT


SB
TT
TT
B

S

TTSS


SS


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   330.........340.... .....350.........360.........370.........380.........390.........400........
 
   386...390.........400.........410.........420.........430.........440.........450.........460
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Query Sequence  LEGGCHHTAAMHSRNIENMNQMANAIDTSIFVKNGPCIAGLGLGGEGWTTMTITTPTGEGVTSARTFVRLRRCVL
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Template Sequence  TEFGL. . AAYFYARDLSRVFRVGEALEYGIVGINTGIISNEV. APFGGIKASGLGREG. SKYGIEDYLEIKYMCI
Template Known Secondary structure  SS

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SS
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SS.S
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SGGGS
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   409410... ......420.........430.........440........ .450.........460... ......470.........
 
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No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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