Job Description P77445 Confidence 100.00% Date Thu Jan 5 12:29:23 GMT 2012 Rank 30 Aligned Residues 436 % Identity 21% Template c3efvC_ PDB info PDB header:oxidoreductase Chain: C: PDB Molecule:putative succinate-semialdehyde dehydrogenase; PDBTitle: crystal structure of a putative succinate-semialdehyde dehydrogenase2 from salmonella typhimurium lt2 with bound nad Resolution 1.90 Å

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		17	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.			.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.			90	.	.
Predicted Secondary structure																																					.	.																																							.	.
Query SS confidence																																					.	.																																							.	.
Query Sequence		M	Q	S	S	D	T	P	S	A	A	V	H	E	M	G	V	F	A	S	L	D	D	A	V	A	A	A	K	V	A	Q	Q	G	L	K	.	.	S	V	A	M	R	Q	L	A	I	A	A	I	R	E	A	G	E	K	H	A	R	D	L	A	E	L	A	V	S	E	T	G	M	G	R	V	E	D	.	.	K	F	A
Query Conservation																																					.	.																																							.	.
Alig confidence																																					.	.																																							.	.
Template Conservation
Template Sequence		V	N	P	A	T	G	Q	T	L	A	A	X	P	W	A	N	A	Q	E	I	E	H	A	L	S	L	A	A	S	G	F	K	K	W	K	X	T	S	V	A	Q	R	A	Q	T	L	R	D	I	G	Q	A	L	R	A	H	A	E	E	X	A	Q	C	I	T	R	E	X	G	K	P	I	K	Q	A	R	A	E	V	T
Template Known Secondary structure				T	T	T																														T	T	S																			T
Template Predicted Secondary structure
Template SS confidence
		12	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.
		93	.	.	.	.	.	.	100	.			.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170
Predicted Secondary structure											.	.
Query SS confidence											.	.
Query Sequence		K	N	V	A	Q	A	R	G	T	.	.	P	G	V	E	C	L	S	P	Q	V	L	T	G	D	N	G	L	T	L	I	E	N	A	P	W	G	V	V	A	S	V	T	P	S	T	N	P	A	A	T	V	I	N	N	A	I	S	L	I	A	A	G	N	S	V	I	F	A	P	H	P	A	A	K	K	V	S	Q	R
Query Conservation											.	.
Alig confidence											.	.
Template Conservation
Template Sequence		K	S	A	A	L	C	D	W	Y	A	E	H	G	P	A	X	L	N	P	E	P	T	L	V	E	N	Q	Q	A	V	I	E	Y	R	P	L	G	V	I	L	A	I	X	P	W	N	F	P	L	W	Q	V	L	R	G	A	V	P	I	L	L	A	G	N	S	Y	L	L	K	H	A	P	N	V	T	G	C	A	Q	X
Template Known Secondary structure																		T	S					S	S	G	G	G																		S	S	S	T	T													T	T									G	G	G
Template Predicted Secondary structure
Template SS confidence
		92	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.
		171	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.				230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.
Predicted Secondary structure																																																													.	.	.
Query SS confidence																																																													.	.	.
Query Sequence		A	I	T	L	L	N	Q	A	I	V	A	A	G	G	P	E	N	L	L	V	T	V	A	N	P	D	I	E	T	A	Q	R	L	F	K	F	P	G	I	G	L	L	V	V	T	G	G	E	A	V	V	E	A	A	R	K	H	T	N	.	.	.	K	R	L	I	A	A	G	A	G	N	P	P	V	V	V	D	E	T
Query Conservation																																																													.	.	.
Alig confidence									.	.	.	.														.																																			.	.	.
Template Conservation									.	.	.	.														.
Template Sequence		I	A	R	I	L	A	E	.	.	.	.	A	G	T	P	A	G	V	Y	G	W	V	N	A	.	N	N	E	G	V	S	Q	X	I	N	D	P	R	I	A	A	V	T	V	T	G	S	V	R	A	G	A	A	I	G	A	Q	A	G	A	A	L	K	K	C	V	L	E	L	G	G	S	D	P	F	I	V	L	N	D
Template Known Secondary structure									.	.	.	.	T	T			B	T	T							.										T	S	T	T								S															T	T																	T	T
Template Predicted Secondary structure									.	.	.	.														.
Template SS confidence
		172	.	.	.	.	.	.					.	180	.	.	.	.	.	.	.	.	.	190	.		.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.
		248	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.				300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.
Predicted Secondary structure																																																						.	.	.
Query SS confidence																																																						.	.	.
Query Sequence		A	D	L	A	R	A	A	Q	S	I	V	K	G	A	S	F	D	N	N	I	I	C	A	D	E	K	V	L	I	V	V	D	S	V	A	D	E	L	M	R	L	M	E	G	Q	H	A	V	K	L	T	A	.	.	.	E	Q	A	Q	Q	L	Q	P	V	L	L	K	N	I	D	E	R	G	K	G	T	V	S	R	D
Query Conservation																																																						.	.	.
Alig confidence																																																						.	.	.																								.
Template Conservation																																																																																.
Template Sequence		A	D	L	E	L	A	V	K	A	A	V	A	G	R	Y	Q	N	T	G	Q	V	C	A	A	A	K	R	F	I	V	E	E	G	I	A	Q	A	F	T	D	R	F	V	A	A	A	A	A	L	K	X	G	D	P	L	V	E	E	N	D	L	G	P	X	A	R	F	D	L	R	D	E	L	H	Q	Q	V	Q	.	A
Template Known Secondary structure		S															G	G	G	G			T	T																												B	S		T	T	S	T	T		S	B				S														.
Template Predicted Secondary structure																																																																																.
Template SS confidence
		247	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.		.
		325	.	.	.	.	330	.	.	.	.	.	.	.			.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.
Predicted Secondary structure															.	.
Query SS confidence															.	.
Query Sequence		W	V	G	R	D	A	G	K	I	A	A	A	I	.	.	G	L	K	V	P	Q	E	T	R	L	L	F	V	E	T	T	A	E	H	P	F	A	V	T	E	L	M	M	P	V	L	P	V	V	R	V	A	N	V	A	D	A	I	A	L	A	V	K	L	E	G	G	C	H	H	T	A	A	M	H	S	R	N	I	E
Query Conservation															.	.
Alig confidence															.	.																																																						.	.
Template Conservation																																																																						.	.
Template Sequence		S	V	A	E	G	A	R	L	L	L	G	G	E	K	I	A	G	E	G	N	Y	Y	A	A	T	V	L	A	D	V	T	P	D	X	T	A	F	R	Q	E	L	F	G	P	V	A	A	I	T	V	A	K	D	A	A	H	A	L	A	L	A	N	D	S	E	F	G	L	.	.	S	A	T	I	F	T	A	D	D	T
Template Known Secondary structure						T								S	B		S	S	S	S			B							S			T	T	S					S				S	S								S	S											S	S			S	.	.							S
Template Predicted Secondary structure																																																																						.	.
Template SS confidence
		326	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.			.	.	.	.	.	.	400	.	.	.
		403	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		N	M	N	Q	M	A	N	A	I	D	T	S	I	F	V	K	N	G	P	C	I	A	G	L	G	L	G	G	E	G	W	T	T	M	T	I	T	T	P	T	G	E	G	V	T	S	A	R	T	F	V	R	L	R	R	C	V	L	V	D	A
Query Conservation
Alig confidence																								.																			.													.
Template Conservation																								.																			.													.
Template Sequence		L	A	A	E	X	A	A	R	L	E	C	G	G	V	F	I	N	G	Y	S	A	S	.	D	A	R	V	A	F	G	G	V	K	K	S	G	F	G	R	E	L	.	S	H	F	G	L	H	E	F	C	N	V	Q	.	T	V	W	K	N	R
Template Known Secondary structure												S	S					S	S					.		T	T	S		B			S	G	G	G					B	S	.							T	T					.
Template Predicted Secondary structure																								.																			.													.
Template SS confidence
		404	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.		.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.		.	.	.	.	.	.	450	.	.	.	.	.		.	.	.	.	460	.