Job Description P77445 Confidence 100.00% Date Thu Jan 5 12:29:23 GMT 2012 Rank 22 Aligned Residues 451 % Identity 16% Template c2w8qA_ PDB info PDB header:oxidoreductase Chain: A: PDB Molecule:succinate-semialdehyde dehydrogenase, PDBTitle: the crystal structure of human ssadh in complex with ssa. Resolution 2.40 Å

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		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.			.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.
Predicted Secondary structure																																																					.	.
Query SS confidence																																																					.	.
Query Sequence		M	N	Q	Q	D	I	E	Q	V	V	K	A	V	L	L	K	M	Q	S	S	D	T	P	S	A	A	V	H	E	M	G	V	F	A	S	L	D	D	A	V	A	A	A	K	V	A	Q	Q	G	L	K	.	.	S	V	A	M	R	Q	L	A	I	A	A	I	R	E	A	G	E	K	H	A	R	D	L	A	E	L	A
Query Conservation																																																					.	.
Alig confidence										.	.																																										.	.
Template Conservation										.	.
Template Sequence		V	G	G	R	W	L	P	A	.	.	A	A	T	F	P	V	Q	D	P	A	S	G	A	A	L	G	M	V	A	D	C	G	V	R	E	A	R	A	A	V	R	A	A	Y	E	A	F	C	R	W	R	E	V	S	A	K	E	R	S	S	L	L	R	K	W	Y	N	L	M	I	Q	N	K	D	D	L	A	R	I	I
Template Known Secondary structure			T	T						.	.	S								T	T	T																														T	T	S																			T
Template Predicted Secondary structure										.	.
Template SS confidence
		65	.	.	.	.	70	.	.			.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.
		79	80	.	.	.	.	.	.	.	.	.			90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.				.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.
Predicted Secondary structure													.	.																							.	.	.
Query SS confidence													.	.																							.	.	.
Query Sequence		V	S	E	T	G	M	G	R	V	E	D	.	.	K	F	A	K	N	V	A	Q	A	R	G	T	P	G	V	E	C	L	S	P	Q	V	.	.	.	L	T	G	D	N	G	L	T	L	I	E	N	A	P	W	G	V	V	A	S	V	T	P	S	T	N	P	A	A	T	V	I	N	N	A	I	S	L	I	A	A	G
Query Conservation													.	.																							.	.	.
Alig confidence													.	.																							.	.	.
Template Conservation
Template Sequence		T	A	E	S	G	K	P	L	K	E	A	H	G	E	I	L	Y	S	A	F	F	L	E	W	F	S	E	E	A	R	R	V	Y	G	D	I	I	H	T	P	A	K	D	R	R	A	L	V	L	K	Q	P	I	G	V	A	A	V	I	T	P	W	N	F	P	S	A	M	I	T	R	K	V	G	A	A	L	A	A	G
Template Known Secondary structure																														G	G	G									S		T	T																			S	S	S	T	T														T
Template Predicted Secondary structure
Template SS confidence
		143	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.
		154	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.				.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230
Predicted Secondary structure																																													.	.	.
Query SS confidence																																													.	.	.
Query Sequence		N	S	V	I	F	A	P	H	P	A	A	K	K	V	S	Q	R	A	I	T	L	L	N	Q	A	I	V	A	A	G	G	P	E	N	L	L	V	T	V	A	N	P	D	.	.	.	I	E	T	A	Q	R	L	F	K	F	P	G	I	G	L	L	V	V	T	G	G	E	A	V	V	E	A	A	R	K	H	T	N	K
Query Conservation																																													.	.	.
Alig confidence																										.	.	.	.																.	.	.
Template Conservation																										.	.	.	.
Template Sequence		C	T	V	V	V	K	P	A	E	D	T	P	F	S	A	L	A	L	A	E	L	A	S	Q	.	.	.	.	A	G	I	P	S	G	V	Y	N	V	I	P	C	S	R	K	N	A	K	E	V	G	E	A	I	C	T	D	P	L	V	S	K	I	S	F	T	G	S	T	T	T	G	K	I	L	L	H	H	A	A	N
Template Known Secondary structure										T	T	S														.	.	.	.		T			T	T	S																			T	T		T	T																						T
Template Predicted Secondary structure																										.	.	.	.
Template SS confidence
		223	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.					.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.
					231	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.					.	300	.	.	.
Predicted Secondary structure		.	.	.																																																																					.	.	.	.
Query SS confidence		.	.	.																																																																					.	.	.	.
Query Sequence		.	.	.	R	L	I	A	A	G	A	G	N	P	P	V	V	V	D	E	T	A	D	L	A	R	A	A	Q	S	I	V	K	G	A	S	F	D	N	N	I	I	C	A	D	E	K	V	L	I	V	V	D	S	V	A	D	E	L	M	R	L	M	E	G	Q	H	A	V	K	L	T	.	.	.	.	A	E	Q	A	Q
Query Conservation		.	.	.																																																																					.	.	.	.
Alig confidence		.	.	.																																																																					.	.	.	.
Template Conservation
Template Sequence		S	V	K	R	V	S	M	E	L	G	G	L	A	P	F	I	V	F	D	S	A	N	V	D	Q	A	V	A	G	A	M	A	S	K	F	R	N	T	G	Q	T	A	V	C	S	N	Q	F	L	V	Q	R	G	I	H	D	A	F	V	K	A	F	A	E	A	M	K	K	N	L	R	V	G	N	G	F	E	E	G	T
Template Known Secondary structure		T	T																	T	T	S															T	T	T	T		S	T	T	S																												B	S		T	T	S	T	T
Template Predicted Secondary structure
Template SS confidence
		299	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.
		304	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.			.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.
Predicted Secondary structure																																				.	.
Query SS confidence																																				.	.
Query Sequence		Q	L	Q	P	V	L	L	K	N	I	D	E	R	G	K	G	T	V	S	R	D	W	V	G	R	D	A	G	K	I	A	A	A	I	.	.	G	L	K	V	P	Q	E	T	R	L	L	F	V	E	T	T	A	E	H	P	F	A	V	T	E	L	M	M	P	V	L	P	V	V	R	V	A	N	V	A	D	A	I	A
Query Conservation																																				.	.
Alig confidence																					.															.	.
Template Conservation																					.
Template Sequence		T	Q	G	P	L	I	N	E	K	A	V	E	K	V	E	K	Q	V	N	.	D	A	V	S	K	G	A	T	V	V	T	G	G	K	R	H	Q	L	G	K	N	F	F	E	P	T	L	L	C	N	V	T	Q	D	M	L	C	T	H	E	E	T	F	G	P	L	A	P	V	I	K	F	D	T	E	E	E	A	I	A
Template Known Secondary structure			B				S	S													.				T	T	T								S	B		T	T		T	T		B							S			G	G	G	G	T	T		T	T			S	S								S
Template Predicted Secondary structure																					.
Template SS confidence
		379	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.		.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.
		382	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	A	V	K	L	E	G	G	C	H	H	T	A	A	M	H	S	R	N	I	E	N	M	N	Q	M	A	N	A	I	D	T	S	I	F	V	K	N	G	P	C	I	A	G	L	G	L	G	G	E	G	W	T	T	M	T	I	T	T	P	T	G	E	G	V	T	S	A	R	T	F	V	R	L	R	R	C	V	L	V
Query Conservation
Alig confidence											.	.																																				.																.
Template Conservation											.	.																																				.																.
Template Sequence		I	A	N	A	A	D	V	G	L	.	.	A	G	Y	F	Y	S	Q	D	P	A	Q	I	W	R	V	A	E	Q	L	E	V	G	M	V	G	V	N	E	G	L	I	S	S	V	E	.	C	P	F	G	G	V	K	Q	S	G	L	G	R	E	G	.	S	K	Y	G	I	D	E	Y	L	E	L	K	Y	V	C	Y	G
Template Known Secondary structure				T		S	S			S	.	.																			S		S	S					S		S					T	T	.	S		B			S	G	G	G			S		B	S	.	T	T	T	G	G	G	G	G
Template Predicted Secondary structure											.	.																																				.																.
Template SS confidence
		458	.	460	.	.	.	.	.	.			.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.		.	.	.	.	.	.	.	.	510	.	.	.	.	.	.		.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.
		462
Predicted Secondary structure
Query SS confidence
Query Sequence		D
Query Conservation
Alig confidence
Template Conservation
Template Sequence		G
Template Known Secondary structure
Template Predicted Secondary structure
Template SS confidence
		534