Phyre 2 alignment of P25740 with d1o6ca

Job Description P25740
Confidence 99.94% Date Thu Jan 5 11:42:26 GMT 2012

Rank 27 Aligned Residues 330

% Identity 12% Template d1o6ca_

SCOP info UDP-Glycosyltransferase/glycogen phosphorylase UDP-Glycosyltransferase/glycogen phosphorylase UDP-N-acetylglucosamine 2-epimerase

Resolution 2.90

	Insertion relative to template
	Deletion relative to template
	Catalytic residue from the CSA

Detailed help on interpreting your alignment

	1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.			.	.	20	.	.	.	.	.	.	.	.	.	30	.	.		.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50										.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.
Predicted Secondary structure																		.	.																.																			.	.	.	.	.	.	.	.	.
Query SS confidence																		.	.																.																			.	.	.	.	.	.	.	.	.
Query Sequence	M	I	V	A	F	C	L	Y	K	Y	F	P	F	G	G	L	Q	.	.	R	D	F	M	R	I	A	S	T	V	A	A	R	G	H	.	H	V	R	V	Y	T	Q	S	W	E	G	D	C	P	K	A	F	E	.	.	.	.	.	.	.	.	.	L	I	Q	V	P	V	K	S	H	T	N	H	G	R	N	A	E	Y
Query Conservation																		.	.																.																			.	.	.	.	.	.	.	.	.
Alig confidence								.	.	.	.	.	.					.	.																.																			.	.	.	.	.	.	.	.	.
Template Conservation								.	.	.	.	.	.
Template Sequence	L	K	V	X	T	V	F	.	.	.	.	.	.	G	T	R	P	E	A	I	K	X	A	P	L	V	L	E	L	K	K	Y	P	E	I	D	S	Y	V	T	V	T	A	Q	H	R	Q	X	L	D	Q	V	L	D	A	F	H	I	K	P	D	F	D	L	N	I	X	K	E	R	Q	T	L	A	E	I	T	S	N	A
Template Known Secondary structure								.	.	.	.	.	.		S														G	G	G		T	T										S		G	G	G	T							T	T				S								T	T
Template Predicted Secondary structure								.	.	.	.	.	.
Template SS confidence
	4	.	.	.	.	.	10							.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.

	69	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.		90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.
Predicted Secondary structure																						.
Query SS confidence																						.
Query Sequence	Y	A	W	V	Q	N	H	L	K	E	H	P	A	D	R	V	V	G	F	N	K	.	M	P	G	L	D	V	Y	F	A	A	D	V	C	Y	A	E	K	V	A	Q	E	K	G	F	L	Y	R	L	T	S	R	Y	R	H	Y	A	A	F	E	R	A	T	F	E	Q	G	K	S	T	K	L	M	M	L	T	D	K	Q
Query Conservation																						.
Alig confidence																						.																											.	.
Template Conservation																																																	.	.
Template Sequence	L	V	R	L	D	E	L	F	K	D	I	K	P	D	I	V	L	V	H	G	D	T	T	T	T	F	A	G	S	L	A	A	F	Y	H	Q	I	A	V	G	H	V	E	A	G	L	R	T	.	.	G	N	K	Y	S	P	F	P	E	E	L	N	R	Q	X	T	G	A	I	A	D	L	H	F	A	P	T	G	Q	A
Template Known Secondary structure														S						T	T														T	T							S						.	.	S		T	T	T	T	T	T													S					S	S
Template Predicted Secondary structure																																																	.	.
Template SS confidence
	78	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.			.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.

	148	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence	I	A	D	F	Q	K	H	Y	Q	T	E	P	E	R	F	Q	I	L	P	P	G	I	Y	P	D	R	K	Y	S	E	Q	I	P	N	S	R	E	I	Y	R	Q	K	N	G	I	K	E	Q	Q	N	L	L	L	Q	V	G	S	D	F	G	R	K	G	V	D	R	S	I	E	A	L	A	S	L	P	E	S	L	R	H
Query Conservation
Alig confidence								.																																.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation								.																																.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence	K	D	N	L	L	K	E	.	N	K	K	A	D	S	I	F	V	T	G	N	T	A	I	D	A	L	N	T	T	V	R	D	G	Y	S	H	P	V	L	.	.	.	.	.	.	.	.	.	.	.	.	D	Q	V	G	E	D	K	X	I	L	L	T	X	E	N	X	F	K	A	I	R	R	I	V	G	E	F	E	D
Template Known Secondary structure							T	.	T			G	G	G																		S	S				S	T	T	.	.	.	.	.	.	.	.	.	.	.	.	T	T	T	T	T	S																						T	T
Template Predicted Secondary structure								.																																.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
	156	.	.	.	160	.	.		.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.													.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.

	228	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence	N	T	L	L	F	V	V	G	Q	D	K	P	R	K	F	E	A	L	A	E	K	L	G	V	R	S	N	V	H	F	F	S	G	R	N	D	V	S	E	L	M	A	A	A	D	L	L	L	H	P	A	Y	Q	E	A	A	G	I	V	L	L	E	A	I	T	A	G	L	P	V	L	T	T	A	V	C	G	Y	A	H
Query Conservation
Alig confidence									.	.	.	.	.																																							.	.	.	.	.	.	.															.	.
Template Conservation									.	.	.	.	.																																							.	.	.	.	.	.	.															.	.
Template Sequence	V	Q	V	V	Y	P	P	V	.	.	.	.	.	V	R	E	A	A	H	K	H	D	S	D	R	V	H	L	I	E	P	L	E	V	I	D	F	H	N	F	A	A	K	S	H	F	I	L	T	D	G	.	.	.	.	.	.	.	V	Q	E	E	A	P	S	L	G	K	P	V	L	V	.	.	L	R	D	T	T	E
Template Known Secondary structure									.	.	.	.	.											S	S																				S							.	.	.	.	.	.	.					G	G	G	G	T						.	.			S
Template Predicted Secondary structure									.	.	.	.	.																																							.	.	.	.	.	.	.															.	.
Template SS confidence
	233	.	.	.	.	.	.	240						.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.								.	280	.	.	.	.	.	.	.	.	.	290	.	.			.	.	.	.	.	.

	308	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence	Y	I	A	D	A	N	C	G	T	V	I	A	E	P	F	S	Q	E	Q	L	N	E	V	L	R	K	A	L	T	Q	S	P	L	R	M	A	W	A	E	N	A	R	H	Y	A	D	T	Q	D	L	Y	S	L	P	E	K	A	A	D	I	I
Query Conservation
Alig confidence											.	.	.
Template Conservation											.	.	.
Template Sequence	G	V	E	A	G	T	L	K	L	A	.	.	.	G	T	D	E	E	N	I	Y	Q	L	A	K	Q	L	L	T	D	P	D	E	Y	K	K	X	S	Q	A	S	N	P	Y	G	D	G	E	A	S	R	R	I	V	E	E	L	L	F	H	Y
Template Known Secondary structure		T	T	T	T	S	S				.	.	.		S																												T	T			S														T
Template Predicted Secondary structure											.	.	.
Template SS confidence
	310	.	.	.	.	.	.	.	.	.				320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server

Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]

© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys
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