Phyre 2 alignment of P25740 with c3tovB

Job Description P25740
Confidence 96.14% Date Thu Jan 5 11:42:26 GMT 2012

Rank 61 Aligned Residues 307

% Identity 10% Template c3tovB_

PDB info PDB header:transferase Chain: B: PDB Molecule:glycosyl transferase family 9; PDBTitle: the crystal structure of the glycosyl transferase family 9 from2 veillonella parvula dsm 2008

Resolution 2.98 Å

	Insertion relative to template
	Deletion relative to template
	Catalytic residue from the CSA

Detailed help on interpreting your alignment

	2	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30			.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.			.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.
Predicted Secondary structure																														.	.																								.	.
Query SS confidence																														.	.																								.	.
Query Sequence	I	V	A	F	C	L	Y	K	Y	F	P	F	G	G	L	Q	R	D	F	M	R	I	A	S	T	V	A	A	R	.	.	G	H	H	V	R	V	Y	T	Q	S	W	E	G	D	C	P	K	A	F	E	L	I	Q	.	.	V	P	V	K	S	H	T	N	H	G	R	N	A	E	Y	Y	A	W	V	Q	N	H	L	K
Query Conservation																														.	.																								.	.
Alig confidence									.	.	.																			.	.																								.	.
Template Conservation									.	.	.
Template Sequence	R	I	V	V	T	F	L	X	.	.	.	H	L	G	D	V	I	L	T	T	P	F	L	E	V	L	R	K	A	A	P	H	S	H	I	T	Y	V	I	D	E	K	L	Q	Q	V	X	E	Y	N	P	N	I	D	E	L	I	V	V	D	K	K	G	R	H	N	S	I	S	G	L	N	E	V	A	R	E	I	N	A
Template Known Secondary structure									.	.	.								T												T	T									G	G	G	G	G	G	T	T	T		T	T		S							T	T	T	T	T	S	S
Template Predicted Secondary structure									.	.	.
Template SS confidence
	7	.	.	10	.	.	.	.				.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.

	78	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence	E	H	P	A	D	R	V	V	G	F	N	K	M	P	G	L	D	V	Y	F	A	A	D	V	C	Y	A	E	K	V	A	Q	E	K	G	F	L	Y	R	L	T	S	R	Y	R	H	Y	A	A	F	E	R	A	T	F	E	Q	G	K	S	T	K	L	M	M	L	T	D	K	Q	I	A	D	F	Q	K	H	Y	Q	T
Query Conservation
Alig confidence																																																							.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																																							.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence	K	G	K	T	D	I	V	I	N	L	H	P	N	E	R	T	S	Y	L	A	W	K	I	H	A	P	I	T	T	G	X	S	H	F	L	F	R	P	F	X	T	K	Y	T	R	L	D	R	K	T	R	H	A	A	.	.	.	.	.	.	.	.	.	.	.	.	.	D	X	Y	I	N	V	L	E	Q	L	G	V	T
Template Known Secondary structure													S													S								G	G	G	G	G	G		S							T	T	T	S				.	.	.	.	.	.	.	.	.	.	.	.	.											T
Template Predicted Secondary structure																																																							.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
	84	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.														.	.	140	.	.	.	.	.	.	.	.	.	150

	158	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.				.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.
Predicted Secondary structure																																														.	.	.
Query SS confidence																																														.	.	.
Query Sequence	E	P	E	R	F	Q	I	L	P	P	G	I	Y	P	D	R	K	Y	S	E	Q	I	P	N	S	R	E	I	Y	R	Q	K	N	G	I	K	E	Q	Q	N	L	L	L	Q	V	.	.	.	G	S	D	F	G	R	K	G	V	D	R	S	I	E	A	L	A	S	L	P	E	S	L	R	H	N	T	L	L	F	V	V
Query Conservation																																														.	.	.
Alig confidence						.	.	.	.	.	.	.																																		.	.	.																						.
Template Conservation						.	.	.	.	.	.	.																																																										.
Template Sequence	D	T	S	N	S	.	.	.	.	.	.	.	G	L	H	I	E	I	C	E	E	W	R	C	Q	A	Q	E	F	Y	S	S	H	G	L	T	D	T	D	I	L	I	G	F	N	I	G	S	A	V	P	E	K	R	W	P	A	E	R	F	A	H	V	A	D	Y	F	G	R	.	L	G	Y	K	T	V	F	F	G	G
Template Known Secondary structure						.	.	.	.	.	.	.	S	S																		T	T	T			T	T											S	S	G	G	G																	.	T	T
Template Predicted Secondary structure						.	.	.	.	.	.	.																																																										.
Template SS confidence
	151	.	.	.	.								.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.		.	.	.	.	.	.	.	220	.	.

	235	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence	G	Q	D	K	P	R	K	F	E	A	L	A	E	K	L	G	V	R	S	N	V	H	F	F	S	G	R	N	D	V	S	E	L	M	A	A	A	D	L	L	L	H	P	A	Y	Q	E	A	A	G	I	V	L	L	E	A	I	T	A	G	L	P	V	L	T	T	A	V	C	G	Y	A	H	Y	I	A	D	A	N	C
Query Conservation
Alig confidence																																													.	.	.	.	.
Template Conservation																																													.	.	.	.	.
Template Sequence	P	X	D	L	E	X	V	Q	P	V	V	E	Q	X	E	T	K	P	I	V	A	T	G	K	F	Q	L	G	P	L	A	A	A	X	N	R	C	N	L	L	I	T	N	D	.	.	.	.	.	S	G	P	X	H	V	G	I	S	Q	G	V	P	I	V	A	L	Y	G	P	S	N	P	F	F	Y	G	P	Y	Q	A
Template Known Secondary structure	G	G	G										T		S	S						T	T															S						S	.	.	.	.	.	S									T	T									S	S						S			S	S
Template Predicted Secondary structure																																													.	.	.	.	.
Template SS confidence
	223	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.						.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.

	315	.	.	.	.																						320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.
Predicted Secondary structure						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence	G	T	V	I	A	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	E	P	F	S	Q	E	Q	L	N	E	V	L	R	K	A	L	T	Q
Query Conservation						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence	H	A	I	V	L	E	T	X	D	S	Y	E	S	X	K	K	I	I	K	E	G	N	Y	K	G	L	S	V	I	S	E	E	Q	V	I	K	A	A	E	T	L	L	L	E
Template Known Secondary structure	S						S		S											T					T	T	T	T	S
Template Predicted Secondary structure
Template SS confidence
	298	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.

Download:

Text version

No model constructed - rank, confidence too low

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server

Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]

© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys
Disclaimer
Terms and Conditions