Job Description P25740 Confidence 99.90% Date Thu Jan 5 11:42:26 GMT 2012 Rank 31 Aligned Residues 348 % Identity 13% Template c3othB_ PDB info PDB header:transferase/antibiotic Chain: B: PDB Molecule:calg1; PDBTitle: crystal structure of calg1, calicheamicin glycostyltransferase, tdp2 and calicheamicin alpha3i bound form Resolution 2.30 Å

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		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.
Predicted Secondary structure																																																												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																																												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		M	I	V	A	F	C	L	Y	K	Y	F	P	F	G	G	L	Q	R	D	F	M	R	I	A	S	T	V	A	A	R	G	H	H	V	R	V	Y	T	Q	S	W	E	G	D	C	P	K	A	F	E	L	I	Q	V	P	V	K	S	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Conservation																																																												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence									.	.	.																																																	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation									.	.	.
Template Sequence		X	R	V	L	F	A	S	.	.	.	L	G	T	H	G	H	T	Y	P	L	L	P	L	A	T	A	A	R	A	A	G	H	E	V	T	F	A	T	G	E	G	F	A	G	T	L	R	K	L	G	F	E	P	V	A	T	G	X	P	V	F	D	G	F	L	A	A	L	R	I	R	F	D	T	D	S	P	E	G	L
Template Known Secondary structure									.	.	.		S	S					G	G	G										T	T									G	G	G							T	T							S																S		S			T	T
Template Predicted Secondary structure									.	.	.
Template SS confidence
		1	.	.	.	.	.	.				.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.
													59	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.
Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.
Query SS confidence		.	.	.	.	.	.	.	.	.	.	.
Query Sequence		.	.	.	.	.	.	.	.	.	.	.	H	T	N	H	G	R	N	A	E	Y	Y	A	W	V	Q	N	H	L	K	E	H	P	A	D	R	V	V	G	F	N	K	M	P	G	L	D	V	Y	F	A	A	D	V	C	Y	A	E	K	V	A	Q	E	K	G	F	L	Y	R	L	T	S	R	Y	R	H	Y	A	A	F
Query Conservation		.	.	.	.	.	.	.	.	.	.	.
Alig confidence		.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		T	P	E	Q	L	S	E	L	P	Q	I	V	F	G	R	V	I	P	Q	R	V	F	D	E	L	Q	P	V	I	E	R	L	R	P	D	L	V	V	Q	E	I	S	N	Y	G	A	G	L	A	A	L	K	A	G	I	P	T	I	C	H	G	V	G	R	D	T	P	D	D	L	T	R	S	I	E	E	E	V	R	G
Template Known Secondary structure							T	T								T																				S						T	T												T									S					S
Template Predicted Secondary structure
Template SS confidence
		78	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.
		128	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		E	R	A	T	F	E	Q	G	K	S	T	K	L	M	M	L	T	D	K	Q	I	A	D	F	Q	K	H	Y	Q	T	E	P	E	R	F	Q	I	L	P	P	G	I	Y	P	D	R	K	Y	S	E	Q	I	P	N	S	R	E	I	Y	R	Q	K	N	G	I	K	E	Q	Q	N	L	L	L	Q	V	G	S	D	F	G
Query Conservation
Alig confidence																						.	.	.	.
Template Conservation																						.	.	.	.
Template Sequence		L	A	Q	R	L	G	L	D	L	P	P	G	R	I	D	G	F	G	N	P	.	.	.	.	F	I	D	I	F	P	P	S	L	Q	E	P	E	F	R	A	R	P	R	R	H	E	L	R	P	V	P	F	A	E	Q	G	D	L	P	A	W	L	S	S	R	D	T	A	R	P	L	V	Y	L	T	L	G	T	S	S
Template Known Secondary structure							T					S	S			G	G	G	G			.	.	.	.					S		T	T	T	S						T		T	T																	G	G	G	G	G	S		T	T	S								T	T	T	T
Template Predicted Secondary structure																						.	.	.	.
Template SS confidence
		158	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.					.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.
		208	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		R	K	G	V	D	R	S	I	E	A	L	A	S	L	P	E	S	L	R	H	N	T	L	L	F	V	V	G	Q	D	K	P	R	K	F	E	A	L	A	E	K	L	G	V	R	S	N	V	H	F	F	S	G	R	N	D	V	S	E	L	M	A	A	A	D	L	L	L	H	P	A	Y	Q	E	A	A	G	I	V	L
Query Conservation
Alig confidence																																					.	.	.	.	.	.	.														.	.	.	.	.
Template Conservation																																					.	.	.	.	.	.	.														.	.	.	.	.
Template Sequence		G	G	T	V	E	V	L	R	A	A	I	D	G	L	A	G	L	D	A	D	V	L	V	A	S	G	P	S	L	D	V	S	G	L	G	.	.	.	.	.	.	.	E	V	P	A	N	V	R	L	E	S	W	V	P	.	.	.	.	.	Q	A	A	L	L	P	H	V	D	L	V	V	H	H	G	G	S	G	T	T
Template Known Secondary structure		S															T	S	S	S							T	T	T				T	T			.	.	.	.	.	.	.				T	T					S				.	.	.	.	.					G	G	G		S					S
Template Predicted Secondary structure																																					.	.	.	.	.	.	.														.	.	.	.	.
Template SS confidence
		234	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.								.	270	.	.	.	.	.	.	.	.	.	280	.						.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.
		288	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.					.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.		.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.
Predicted Secondary structure																			.	.	.	.																			.
Query SS confidence																			.	.	.	.																			.
Query Sequence		L	E	A	I	T	A	G	L	P	V	L	T	T	A	V	C	G	.	.	.	.	Y	A	H	Y	I	A	D	A	N	C	G	T	V	I	A	E	P	F	.	S	Q	E	Q	L	N	E	V	L	R	K	A	L	T	Q	S	P	L	R	M	A	W	A	E	N	A	R	H	Y	A	D	T	Q	D	L	Y	S	L	P	E
Query Conservation																			.	.	.	.																			.
Alig confidence																			.	.	.	.																			.
Template Conservation
Template Sequence		L	G	A	L	G	A	G	V	P	Q	L	S	F	P	W	A	G	D	S	F	A	N	A	Q	A	V	A	Q	A	G	A	G	D	H	L	L	P	D	N	I	S	P	D	S	V	S	G	A	A	K	R	L	L	A	E	E	S	Y	R	A	G	A	R	A	V	A	A	E	I	A	A	X	P	G	P	D	E	V	V	R
Template Known Secondary structure							T	T									S	T	T											T	T	S						G	G	G		S															T																S							G	G
Template Predicted Secondary structure
Template SS confidence
		302	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.
		363	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		K	A	A	D	I
Query Conservation
Alig confidence
Template Conservation
Template Sequence		L	L	P	G	F
Template Known Secondary structure		G
Template Predicted Secondary structure
Template SS confidence
		382	.	.	.	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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