Job Description P25740 Confidence 99.96% Date Thu Jan 5 11:42:26 GMT 2012 Rank 25 Aligned Residues 305 % Identity 17% Template c2xcuC_ PDB info PDB header:transferase Chain: C: PDB Molecule:3-deoxy-d-manno-2-octulosonic acid transferase; PDBTitle: membrane-embedded monofunctional glycosyltransferase waaa of aquifex2 aeolicus, comlex with cmp Resolution 2.42 Å

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		15	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.							.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.
Predicted Secondary structure																															.	.	.	.	.	.
Query SS confidence																															.	.	.	.	.	.
Query Sequence		G	L	Q	R	D	F	M	R	I	A	S	T	V	A	A	R	G	H	H	V	R	V	Y	T	Q	S	W	E	G	.	.	.	.	.	.	D	C	P	K	A	F	E	L	I	Q	V	P	V	K	S	H	T	N	H	G	R	N	A	E	Y	Y	A	W	V	Q	N	H	L	K	E	H	P	A	D	R	V	V	G	F	N
Query Conservation																															.	.	.	.	.	.
Alig confidence															.																.	.	.	.	.	.														.	.	.	.	.	.	.	.	.	.
Template Conservation															.																																			.	.	.	.	.	.	.	.	.	.
Template Sequence		G	E	F	N	T	F	L	P	I	L	K	E	L	.	K	R	E	H	R	I	L	L	T	Y	F	S	P	R	A	R	E	Y	L	K	T	K	S	D	F	Y	D	C	L	H	P	L	P	L	.	.	.	.	.	.	.	.	.	.	D	N	P	F	S	V	K	R	F	E	E	L	S	K	P	K	A	L	I	V	V	E
Template Known Secondary structure															.	T	T	T	S							S		T	T							T	T	G	G	G		S								.	.	.	.	.	.	.	.	.	.	S	S														S						S
Template Predicted Secondary structure															.																																			.	.	.	.	.	.	.	.	.	.
Template SS confidence
		30	.	.	.	.	.	.	.	.	.	40	.	.		.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.											.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.
		89	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		K	M	P	G	L	D	V	Y	F	A	A	D	V	C	Y	A	E	K	V	A	Q	E	K	G	F	L	Y	R	L	T	S	R	Y	R	H	Y	A	A	F	E	R	A	T	F	E	Q	G	K	S	T	K	L	M	M	L	T	D	K	Q	I	A	D	F	Q	K	H	Y	Q	T	E	P	E	R	F	Q	I	L	P	P	G
Query Conservation
Alig confidence																												.	.	.	.	.	.	.	.	.	.	.	.	.	.																												.	.	.
Template Conservation																												.	.	.	.	.	.	.	.	.	.	.	.	.	.																												.	.	.
Template Sequence		R	E	F	W	P	S	L	I	I	F	T	K	V	P	K	I	L	V	N	A	Y	A	K	G	S	L	.	.	.	.	.	.	.	.	.	.	.	.	.	.	I	E	K	I	L	S	K	K	F	D	L	I	I	M	R	T	Q	E	D	V	E	K	F	K	T	F	G	.	.	.	A	K	R	V	F	S	C	G	N	L
Template Known Secondary structure														S														.	.	.	.	.	.	.	.	.	.	.	.	.	.						G	G	G		S					S	S									T	T	T	.	.	.		S	S							G
Template Predicted Secondary structure																												.	.	.	.	.	.	.	.	.	.	.	.	.	.																												.	.	.
Template SS confidence
		99	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.															.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.				.	.	.	.	.	.	.	.	160	.
		169	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.		240	.	.	.	.	.	.	.
Predicted Secondary structure																																																																									.
Query SS confidence																																																																									.
Query Sequence		I	Y	P	D	R	K	Y	S	E	Q	I	P	N	S	R	E	I	Y	R	Q	K	N	G	I	K	E	Q	Q	N	L	L	L	Q	V	G	S	D	F	G	R	K	G	V	D	R	S	I	E	A	L	A	S	L	P	E	S	L	R	H	N	T	L	L	F	V	V	G	Q	D	K	P	.	R	K	F	E	A	L	A	E
Query Conservation																																																																									.
Alig confidence																.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																										.
Template Conservation																.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		K	F	I	C	Q	K	G	K	G	I	K	L	K	G	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	E	F	I	V	A	G	S	I	H	T	G	E	V	E	I	I	L	K	A	F	K	E	I	K	K	T	Y	S	S	L	K	L	I	L	V	P	R	H	I	E	N	A	K	I	F	E	K	K	A	R
Template Known Secondary structure		G	G											S	S	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.										G	G	G													T	T		T	T								S	S	G	G	G
Template Predicted Secondary structure																.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		162	.	.	.	.	.	.	.	170	.	.	.	.	.																	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.
		248	.	250	.									.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.		.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.		.	.	.	.	.	.	.	.	310	.		.	.	.	.	.
Predicted Secondary structure						.	.	.	.	.	.	.	.																							.																													.											.
Query SS confidence						.	.	.	.	.	.	.	.																							.																													.											.
Query Sequence		K	L	G	V	.	.	.	.	.	.	.	.	R	S	N	V	H	F	F	S	G	R	N	D	V	S	E	L	M	A	A	A	D	L	.	L	L	H	P	A	Y	Q	E	A	A	G	I	V	L	L	E	A	I	T	A	G	L	P	V	L	T	T	A	.	V	C	G	Y	A	H	Y	I	A	D	.	A	N	C	G	T
Query Conservation						.	.	.	.	.	.	.	.																							.																													.											.
Alig confidence						.	.	.	.	.	.	.	.																							.																													.											.
Template Conservation
Template Sequence		D	F	G	F	K	T	S	F	F	E	N	L	E	G	D	V	I	L	V	D	R	F	G	I	L	K	E	L	Y	P	V	G	K	I	A	I	V	G	G	T	F	V	N	I	G	G	H	N	L	L	E	P	T	C	W	G	I	P	V	I	Y	G	P	Y	T	H	K	V	N	D	L	K	E	F	L	E	K	E	G	A
Template Known Secondary structure			T	T						T	T				S	S							T	T						G	G	G								S	S	S	S	T	T											T	T							S			T	T	S										T	T
Template Predicted Secondary structure
Template SS confidence
		226	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.
		317	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370
Predicted Secondary structure
Query SS confidence
Query Sequence		V	I	A	E	P	F	S	Q	E	Q	L	N	E	V	L	R	K	A	L	T	Q	S	P	L	R	M	A	W	A	E	N	A	R	H	Y	A	D	T	Q	D	L	Y	S	L	P	E	K	A	A	D	I	I	T	G
Query Conservation
Alig confidence					.																				.																.	.	.	.	.
Template Conservation					.																				.																.	.	.	.	.
Template Sequence		G	F	E	.	V	K	N	E	T	E	L	V	T	K	L	T	E	L	L	S	V	K	K	.	E	I	K	V	E	E	K	S	R	E	I	K	G	C	Y	.	.	.	.	.	L	E	K	L	R	E	F	L	R	G
Template Known Secondary structure					.			S														S			.																.	.	.	.	.
Template Predicted Secondary structure					.																				.																.	.	.	.	.
Template SS confidence
		306	.	.		.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.		.	.	330	.	.	.	.	.	.	.	.	.	340	.	.						.	.	.	.	.	.	.	350	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions