Job Description P25740 Confidence 99.87% Date Thu Jan 5 11:42:26 GMT 2012 Rank 35 Aligned Residues 340 % Identity 13% Template c2vsnB_ PDB info PDB header:transferase Chain: B: PDB Molecule:xcogt; PDBTitle: structure and topological arrangement of an o-glcnac2 transferase homolog: insight into molecular control of3 intracellular glycosylation Resolution 2.75 Å

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		2	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.
Predicted Secondary structure
Query SS confidence
Query Sequence		I	V	A	F	C	L	Y	K	Y	F	P	F	G	G	L	Q	R	D	F	M	R	I	A	S	T	V	A	A	R	G	H	H	V	R	V	Y	T	Q	S	W	E	G	D	C	P	K	A	F	E	L	I	Q	V	P	V	K	S	H	T	N	H	G	R	N	A	E	Y	Y	A	W	V	Q	N	H	L	K	E	H	P	A
Query Conservation
Alig confidence													.																																																								.	.
Template Conservation													.																																																								.	.
Template Sequence		R	V	G	F	V	S	N	G	F	G	A	.	H	P	T	G	L	L	T	V	A	L	F	E	A	L	Q	R	R	Q	P	D	L	Q	M	H	L	F	A	T	S	G	D	D	G	S	T	L	R	T	R	L	A	Q	A	S	T	L	H	D	V	T	A	L	G	H	L	.	.	A	T	A	K	H	I	R	H	H	G	I
Template Known Secondary structure								S		S	S	S	.	S																		T	T								S	S				S									T	T	S						T	T	S				.	.									T	T
Template Predicted Secondary structure													.																																																								.	.
Template SS confidence
		207	.	.	210	.	.	.	.	.	.	.		.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.			.	.	.	.	.	.	.	280	.	.	.
		82	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.
Predicted Secondary structure
Query SS confidence
Query Sequence		D	R	V	V	G	F	N	K	M	P	G	L	D	V	Y	F	A	A	D	V	C	Y	A	E	K	V	A	Q	E	K	G	F	L	Y	R	L	T	S	R	Y	R	H	Y	A	A	F	E	R	A	T	F	E	Q	G	K	S	T	K	L	M	M	L	T	D	K	Q	I	A	D	F	Q	K	H	Y	Q	T	E	P	E	R
Query Conservation
Alig confidence																																						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																									.	.	.
Template Conservation																																						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																									.	.	.
Template Sequence		D	L	L	F	D	L	A	G	W	G	G	G	G	R	P	E	V	F	A	L	R	P	A	P	V	Q	V	N	W	L	A	Y	P	G	T	S	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	G	A	P	W	M	D	Y	V	L	G	D	A	F	A	L	P	P	A	L	E	P	F	Y	S	.	.	.	E	H
Template Known Secondary structure		S					S	S		S	S	S	S								T			S	S						S	S	S	S	S			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.			T	T								T	T	T	S		G	G	G	G	G	G		S	.	.	.	S
Template Predicted Secondary structure																																						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																									.	.	.
Template SS confidence
		284	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.																320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.				.	.
		162	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.		.	.	.	.	.	.	240
Predicted Secondary structure																																																																										.
Query SS confidence																																																																										.
Query Sequence		F	Q	I	L	P	P	G	I	Y	P	D	R	K	Y	S	E	Q	I	P	N	S	R	E	I	Y	R	Q	K	N	G	I	K	E	Q	Q	N	L	L	L	Q	V	G	S	D	F	G	R	K	G	V	D	R	S	I	E	A	L	A	S	L	P	E	S	L	R	H	N	T	L	L	F	V	.	V	G	Q	D	K	P	R
Query Conservation																																																																										.
Alig confidence								.	.	.																																				.	.																											.
Template Conservation								.	.	.																																				.	.
Template Sequence		V	L	R	L	Q	G	.	.	.	A	F	Q	P	S	D	T	S	R	V	V	A	E	P	P	S	R	T	Q	C	G	L	P	E	Q	G	V	V	L	C	C	F	N	N	S	.	.	Y	K	L	N	P	Q	S	M	A	R	M	L	A	V	L	R	E	V	P	D	S	V	L	W	L	L	S	G	P	G	E	A	D	A
Template Known Secondary structure						S	S	.	.	.		S					T	T									T	G	G	G	T			S	S	S									G	.	.	G	G																S	T	T									S	T	T
Template Predicted Secondary structure								.	.	.																																				.	.
Template SS confidence
		346	.	.	.	350	.				.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.			.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420
		241	.	.	.	.	.	.	.	.	250	.	.				.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.							310	.
Predicted Secondary structure														.	.	.																																																										.	.	.	.	.	.
Query SS confidence														.	.	.																																																										.	.	.	.	.	.
Query Sequence		K	F	E	A	L	A	E	K	L	G	V	R	.	.	.	S	N	V	H	F	F	S	G	R	N	D	V	S	E	L	M	A	A	A	D	L	L	L	H	P	A	Y	Q	E	A	A	G	I	V	L	L	E	A	I	T	A	G	L	P	V	L	T	T	A	V	C	G	Y	A	H	Y	I	.	.	.	.	.	.	A	D
Query Conservation														.	.	.																																																										.	.	.	.	.	.
Alig confidence														.	.	.																															.																											.	.	.	.	.	.
Template Conservation																																															.
Template Sequence		R	L	R	A	F	A	H	A	Q	G	V	D	A	Q	R	L	V	F	M	P	K	L	P	H	P	Q	Y	L	A	R	Y	R	H	A	D	L	F	L	D	T	H	P	Y	N	A	.	H	T	T	A	S	D	A	L	W	T	G	C	P	V	L	T	T	P	G	E	T	F	A	A	R	V	A	G	S	L	N	H	H	L
Template Known Secondary structure										T	T	S		G	G	G																G	G	G		S						S	S	S			.	S										T					B				S	S	G	G	G	S
Template Predicted Secondary structure																																															.
Template SS confidence
		421	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.		.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.
		312	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.				.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.
Predicted Secondary structure																																													.	.	.
Query SS confidence																																													.	.	.
Query Sequence		A	N	C	G	T	V	I	A	E	P	F	S	Q	E	Q	L	N	E	V	L	R	K	A	L	T	Q	S	P	L	R	M	A	W	A	E	N	A	R	H	Y	A	D	T	.	.	.	Q	D	L	Y	S	L	P	E	K	A	A	D	I	I	T	G	G
Query Conservation																																													.	.	.
Alig confidence								.	.	.																																			.	.	.
Template Conservation								.	.	.
Template Sequence		G	L	D	E	M	N	.	.	.	V	A	D	D	A	A	F	V	A	K	A	V	A	L	A	S	D	P	A	A	L	T	A	L	H	A	R	V	D	V	L	R	R	A	S	G	V	F	H	M	D	G	F	A	D	D	F	G	A	L	L	Q	A	L
Template Known Secondary structure		T		G	G	G	B	.	.	.		S	S																																S	G	G	G
Template Predicted Secondary structure								.	.	.
Template SS confidence
		500	.	.	.	.	.				.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.	.	.	.	.	540	.	.	.	.	.	.	.	.	.	550	.	.	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions