Job Description P25740 Confidence 42.32% Date Thu Jan 5 11:42:26 GMT 2012 Rank 300 Aligned Residues 80 % Identity 10% Template c2j37W_ PDB info PDB header:ribosome Chain: W: PDB Molecule:signal recognition particle 54 kda protein PDBTitle: model of mammalian srp bound to 80s rncs Resolution 8.00 Å

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		3	.	.	.	.	.	.	10	.	.	.	.		.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.						.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.
Predicted Secondary structure														.																															.	.	.	.	.
Query SS confidence														.																															.	.	.	.	.
Query Sequence		V	A	F	C	L	Y	K	Y	F	P	F	G	.	G	L	Q	R	D	F	M	R	I	A	S	T	V	A	A	R	G	H	H	V	R	V	Y	T	Q	S	W	E	G	D	.	.	.	.	.	C	P	K	A	F	E	L	I	Q	V	P	V	K	S	H	T	N	H	G	R	N	A	E	Y	Y	A	W	V	Q	N	H	L
Query Conservation														.																															.	.	.	.	.
Alig confidence						.	.	.	.					.																															.	.	.	.	.
Template Conservation						.	.	.	.
Template Sequence		I	M	F	V	.	.	.	.	G	L	Q	G	S	G	K	T	T	T	C	S	K	L	A	Y	Y	Y	Q	R	K	G	W	K	T	C	L	I	C	A	D	T	F	R	A	G	A	F	D	Q	L	K	Q	N	A	T	K	A	R	I	P	F	Y	G	S	Y	T	E	M	D	P	V	I	I	A	S	E	G	V	E	K	F
Template Known Secondary structure						.	.	.	.		S	T	T	S	S															T	T											S	S	S														T										S
Template Predicted Secondary structure						.	.	.	.
Template SS confidence
		104	.	.	.					.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.
		77	.	.	80	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		K	E	H	P	A	D	R	V	V	G
Query Conservation
Alig confidence
Template Conservation
Template Sequence		K	N	E	N	F	E	I	I	I	V
Template Known Secondary structure				T	T
Template Predicted Secondary structure
Template SS confidence
		180	.	.	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions