 |
Job Description | P25740 | Confidence | 42.13% | Date | Thu Jan 5 11:42:26 GMT 2012 |
Rank | 305 | Aligned Residues | 78 |
% Identity | 8% | Template | c2issF_ |
PDB info |
PDB header:lyase, transferase | Chain: F: PDB Molecule:glutamine amidotransferase subunit pdxt; |
PDBTitle: structure of the plp synthase holoenzyme from thermotoga maritima
|
Resolution | 2.90 Å |
|
 |
  |   |
1 | . | . | . | . | . | . | . | . | 10 | . | . | . | . | . | . | . | . | . | 20 | . | . | . | . | . | . | . | . | . | 30 | . | . | . | . | . | . | . | . | . | 40 | . | . | . | . | . | . | . | . | . | 50 | . | . | . | . | . | . | . | . | . | 60 | . | . | . | . | . | . | . | . | . | 70 | . | . | . | . | . | . | . | . | . | 80 |
Predicted Secondary structure |   |
|  |  |  |  |  |  |
|
|
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|  |  |  |  |  |  |
|
|
|
|
|
|
|
|
|
|
|  |  |  |  |  |  |  |
|
|
|
|
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
Query SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Query Sequence |   |
M | I | V | A | F | C | L | Y | K | Y | F | P | F | G | G | L | Q | R | D | F | M | R | I | A | S | T | V | A | A | R | G | H | H | V | R | V | Y | T | Q | S | W | E | G | D | C | P | K | A | F | E | L | I | Q | V | P | V | K | S | H | T | N | H | G | R | N | A | E | Y | Y | A | W | V | Q | N | H | L | K | E | H | P |
Query Conservation |   |
|
|
|   |   |
|   |   |   |   |   |
|   |
|
|   |   |   |   |   |   |   |
|
|   |   |
|   |   |   |
|   |   |
|   |
|   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |
|   |   |   |
|   |   |   |   |
Alig confidence |   |
|
|
|
|
|
|
|
|
| . | . | . | . | . |
| . | . | . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Template Conservation |   |
  |   |
|
|
|
|   |   |   | . | . | . | . | . |
| . | . | . |   |   |   |   |   |   |   |   |
|   |   |   |
|   |   |   |   |   |
|   |   |   |   |   |
|   |   |   |
|
|
|
|
|   |
|
|   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |
|   |   |   |   |   |   |
|   |
Template Sequence |   |
M | K | I | G | V | L | G | V | Q | . |
. |
. |
. |
. |
G | . |
. |
. |
D | V | R | E | H | V | E | A | L | H | K | L | G | V | E | T | L | I | V | K | L | P | E | Q | L | D | M | V | D | G | L | I | L | P | G | G | E | S | T | T | M | I | R | I | L | K | E | M | D | M | D | E | K | L | V | E | R | I | N | N | G | L |
Template Known Secondary structure |   |
|  |  |  |  |  |
| S | S | . | . | . | . | . | S | . | . | . |
|  |  |  |  |  |  |  |  |  |  | T | T |
|  |  |  |  |  |
| S | G | G | G | G | G | G |
| S |  |  |  |  |
| S | S |
|  |  |  |  |  |  |  |  |  |  | T | T |
|  |  |  |  |  |  |  |  |  | T | T |
|
Template Predicted Secondary structure |   |
|  |  |  |  |  |  |  |
| . | . | . | . | . |
| . | . | . |
|  |  |  |  |  |  |  |  |  |  |
|
|
|  |  |  |  |  |
|
|  |  |  |  |  |  |
|
|  |  |  |  |
|
|
|
|
|
|  |  |  |  |  |  |  |  |
|
|  |  |  |  |  |  |  |  |  |  |
|
|
|
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
1 | . | . | . | . | . | . | . | . | |
|
|
|
|
10 | |
|
|
. | . | . | . | . | . | . | . | . | 20 | . | . | . | . | . | . | . | . | . | 30 | . | . | . | . | . | . | . | . | . | 40 | . | . | . | . | . | . | . | . | . | 50 | . | . | . | . | . | . | . | . | . | 60 | . | . | . | . | . | . | . | . | . | 70 | . | . |
  |
  |   |
81 | . | . | . | . | . |
Predicted Secondary structure |   |
|
|  |  |  |
|
Query SS confidence |   |
|
|
|
|
|
|
Query Sequence |   |
A | D | R | V | V | G |
Query Conservation |   |
  |
|   |
|   |   |
Alig confidence |   |
|
|
|
|
|
|
Template Conservation |   |
|
|
|
|
|
|
Template Sequence |   |
P | V | F | A | T | C |
Template Known Secondary structure |   |
|  |  |  |  | T |
Template Predicted Secondary structure |   |
|  |  |  |  |
|
Template SS confidence |   |
|
|
|
|
|
|
  |   |
73 | . | . | . | . | . |
  |
No model constructed - rank, confidence too low
Phyre is for academic use only
Please cite: Protein structure prediction on
the web: a case study using the Phyre server |
Kelley LA and Sternberg MJE. Nature Protocols
4, 363 - 371 (2009) [pdf] [Import into BibTeX] |
  |
|
|