Return to main results Retrieve Phyre Job Id

Job DescriptionP25740
Confidence26.03%DateThu Jan 5 11:42:26 GMT 2012
Rank479Aligned Residues36
% Identity17%Templatec2dlnA_
PDB info PDB header:ligase(peptidoglycan synthesis)Chain: A: PDB Molecule:d-alanine--d-alanine ligase; PDBTitle: vancomycin resistance: structure of d-alanine:d-alanine2 ligase at 2.3 angstroms resolution
Resolution2.30 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   1........10...... ...20 .........30.........40..
Predicted Secondary structure 







.......






Query SS confidence 















. .



. . . . .





















Query Sequence  MIVAFCLYKYFPFGGL. . QRDF. . . . . MRIASTVAARGHHVRVYTQSWE
Query Conservation 


  
     
 

 ..    .....  

  
   
  
 
      
Alig confidence 





......



..



.....





















Template Conservation   

 
 ...... 

   
  
 
 
   
  

   
  
  

    
Template Sequence  DKIAVL. . . . . . LGGTSAEREVSLNSGAAVLAGLREGGIDAYPVDPKEV
Template Known Secondary structure  S......


SSTTTT

TTTS
Template Predicted Secondary structure 
......









Template SS confidence 
















































   3..... .10.........20.........30.........40.....
 
Download:Text version

No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys 
Disclaimer
Terms and Conditions