Return to main results Retrieve Phyre Job Id

Job DescriptionP25740
Confidence92.72%DateThu Jan 5 11:42:26 GMT 2012
Rank68Aligned Residues347
% Identity14%Templatec1y6gB_
PDB info PDB header:transferase/dnaChain: B: PDB Molecule:dna alpha-glucosyltransferase; PDBTitle: alpha-glucosyltransferase in complex with udp and a 13_mer2 dna containing a hmu base at 2.8 a resolution
Resolution2.80 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   1........10.........20.........30.........40.........50.........60.........70.........80
Predicted Secondary structure 
































Query SS confidence 















































































Query Sequence  MIVAFCLYKYFPFGGLQRDFMRIASTVAARGHHVRVYTQSWEGDCPKAFELIQVPVKSHTNHGRNAEYYAWVQNHLKEHP
Query Conservation 


  
     
 

       

  
   
  
 
                                   
   
    
Alig confidence 



















































....























Template Conservation 



















































....























Template Sequence  MRICIFMARGLEGCGVTKFSLEQRDWFIKNGHEVTLVYAKDKSFTRTSSHDH. . . . KSFSIPVILAKEYDKALKLVNDCD
Template Known Secondary structure 
TT


SSTT
TTS

TTSSSS

....TTT
TSSS
Template Predicted Secondary structure 



























....







Template SS confidence 















































































   1001........1010.........1020.........1030.........1040.........1050.. .......1060.........1070......
 
   81........90. ........100.........110.........120.........130.........140.... .....150
Predicted Secondary structure 






.......
























...
Query SS confidence 










. . . . . . .




















































. . .





Query Sequence  ADRVVGFNKMP. . . . . . . GLDVYFAADVCYAEKVAQEKGFLYRLTSRYRHYAAFERATFEQGKSTKLMMLT. . . DKQIAD
Query Conservation   
 
       .......                                                

  
...      
Alig confidence 










.......



































......










...





Template Conservation 





















































......



















Template Sequence  ILIINSVPATSVQEATINNYKKLLDNIKPSIRVVVYQHDHSVLSLRRNLGLEET. . . . . . VRRADVIFSHSDNGDFNKVL
Template Known Secondary structure 

BTTS
SS
SSS



STTBSS......
SS
TTSTTTTT
Template Predicted Secondary structure 

















......





Template SS confidence 















































































   1077..1080.........1090.........1100.........1110.........1120.........1130 .........1140.........1150
 
   151........160.........170.........180.........190.........200.........210.........220.........230
Predicted Secondary structure 





































Query SS confidence 















































































Query Sequence  FQKHYQTEPERFQILPPGIYPDRKYSEQIPNSREIYRQKNGIKEQQNLLLQVGSDFGRKGVDRSIEALASLPESLRHNTL
Query Conservation                                                  
   
     
    
      
         
Alig confidence 








..........




























































Template Conservation 








..........




























































Template Sequence  MKEWYPEAP. . . . . . . . . . TVYNFQPPMDIVKVRSTYWKDVSEINMNINRWIGRTTTWKGFYQMFDFHEKFLKPAGKSTV
Template Known Secondary structure  S



..........




B



GGG


SSGGG
TTGGGT
Template Predicted Secondary structure 




..........





















Template SS confidence 















































































   1151........ 1160.........1170.........1180.........1190.........1200.........1210.........1220
 
   231....... .240.........250.........260.........270......... 280........
Predicted Secondary structure 






................





















......





Query SS confidence 







. . . . . . . . . . . . . . . .








































. . . . . .








Query Sequence  LFVVGQDK. . . . . . . . . . . . . . . . PRKFEALAEKLGVRSNVHFFSGRNDVSELMAAADLLLHPAY. . . . . . QEAAGIVLL
Query Conservation          ................                                
      
 ...... 
       
Alig confidence 







................








































......








Template Conservation 















































































Template Sequence  MEGLERSPAFIAIKEKGIPYEYYGNREIDKMNLAPNQPAQILDCYINSEMLERMSKSGFGYQLSKLNQKYLQRSLEYTHL
Template Known Secondary structure 




TTTT




TTSGGG


SSS

S


T




GGG
SS


Template Predicted Secondary structure 




























Template SS confidence 















































































   1231........1240.........1250.........1260.........1270.........1280.........1290.........1300.........1310
 
   289290......... 300.........310.........320.........330.........340.........350.. ......
Predicted Secondary structure 


.........














.

Query SS confidence 










. . . . . . . . .




















































.





Query Sequence  EAITAGLPVLT. . . . . . . . . TAVCGYAHYIADANCGTVIAEPFSQEQLNEVLRKALTQSPLRMAWAENARHYA. DTQDLY
Query Conservation 



 
 


 .........
   
  
 
     
 
     
   

 

  

 
      
   

   .      
Alig confidence 










.........






..











































.





Template Conservation 


























..


















































Template Sequence  ELGACGTIPVFWKSTGENLKFRVDNTP. . LTSHDSGIIWFDENDMESTFERIKELSSDRALYDREREKAYEFLYQHQDSS
Template Known Secondary structure  TTSB
B
SSS

B..SSSS





B
SSSS
B
Template Predicted Secondary structure 













..















Template SS confidence 















































































   1311........1320.........1330....... ..1340.........1350.........1360.........1370.........1380........
 
   359360.........
Predicted Secondary structure 
Query SS confidence 










Query Sequence  SLPEKAADIIT
Query Conservation           

Alig confidence 










Template Conservation 










Template Sequence  FCFKEQFDIIT
Template Known Secondary structure 
Template Predicted Secondary structure 


Template SS confidence 










   13891390.........
 
Download:Text version

No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys 
Disclaimer
Terms and Conditions