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Job DescriptionP25740
Confidence100.00%DateThu Jan 5 11:42:26 GMT 2012
Rank14Aligned Residues364
% Identity15%Templatec1uquB_
PDB info PDB header:synthaseChain: B: PDB Molecule:alpha, alpha-trehalose-phosphate synthase; PDBTitle: trehalose-6-phosphate from e. coli bound with udp-glucose.
Resolution2.0 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   2.......10.........20.........30.........40.........50.........60......
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Query Sequence  IVAFCLYKYFPFGGLQRDFMRIASTVAARGHHVRVYTQSWEGDCPKAFELIQVPVKSHTNHGRNA. . . . . . . . . . . . . . .
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Template Sequence  RLVVVSNRIAPAGGLAVG. . . ILGALKAAGG. LWFGWSGETGNEDQPLKKVKKGNITWASFNLSEQDLDEYYNQFSNAVL
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S...
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S
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SSB




TTTT
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   2.......10......... 20......... 30.........40.........50.........60.........70.......
 
   67..70........ .80.........90.........100.........110.........120..
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Query Sequence  . . . . . . . . . . . . . . . . . . . . . . EYYAWVQNHLKE. . HPADRVVGFNKMPGLDVYFAADVCYAEKVAQEKGFLYRLTSRYR
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Template Sequence  WPAFHYRLDLVQFQRPAWDGYLRVNALLADKLLPLLQDDDIIWIHDYHLLPFAHELRKRGVNNRIGFFLHIPFPTPEIFN
Template Known Secondary structure  TT
GGG



GGG

TT
SGGGTTTTT

S

S



T
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   85....90.........100.........110.........120.........130.........140.........150.........160....
 
   123......130.........140.........150... ......160.........170.........180......
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Query Sequence  HYAAFERATFEQGKSTKLMMLTDKQIADFQK. . . . . . . . . . . . . . . . HYQTEPERFQILPPGIYPDRKYSEQIPNSREIY
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Template Sequence  ALPTYDTLLEQLCDYDLLGFQTENDRLAFLDCLSNLTRVTTRSAKSHTAWGKAFRTEVYPIGIEPKEIAKQAAGPLPPKL
Template Known Secondary structure  TSTTTTSSSSS
TTTT





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GGG
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   165....170.........180.........190.........200.........210.........220.........230.........240....
 
   187..190.........200.........210.........220....... ..230.........240.........
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Query Sequence  RQKNGIKEQQNLLLQVGSDFGRKGVDRSIEALASLPESLRH. . . . . . NTLLFVVGQDKPRKFEALAEKL. . . . . . . . . . .
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Template Sequence  AQLKAELKNVQNIFSVERLDYSKGLPERFLAYEALLEKYPQHHGKIRYTQIAPTSRGDVQAYQDIRHQLENEAGRINGKY
Template Known Secondary structure  TTSTTTSTT




GGG

GGGTTT




TTSS
TT
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   245....250.........260.........270.........280.........290.........300.........310.........320....
 
   250.........260.........270.........280.........290...... ...300.........310.........
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Query Sequence  . . . . . GVRSNVHFFSGRNDVSELMAAADLLLHPAYQEAAGIVLLEAITAGLP. . . . . VLTTAVCGYAHYIADANCGTVIA
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Template Sequence  GQLGWTPLYYLNQHFDRKLLMKIFRYSDVGLVTPLRDGMNLVAKEYVAAQDPANPGVLVLSQFAGAANELTS. . . ALIV.
Template Known Secondary structure 
BTTB
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S

SSBS

S
TTS

TTBGGGGT
TT...S.
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   325....330.........340.........350.........360.........370.........380.........390...... ...400
 
   320.........330...... ...340.........350.........360.........370...
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Query Sequence  EPFSQEQLNEVLRKALT. QSPLRMAWAENARHYADTQDLYSLPEKAADIITGGLD
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Template Sequence  NPYDRDEVAAALDRALTMSLAERISRHAEMLDVIVKNDINHWQECFISDLKQIVP
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TT
T

T
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   401........410.........420.........430.........440.........450.....
 
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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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