Job Description P76161 Confidence 99.85% Date Thu Jan 5 12:19:56 GMT 2012 Rank 1 Aligned Residues 154 % Identity 19% Template c1nltA_ PDB info PDB header:protein transport Chain: A: PDB Molecule:mitochondrial protein import protein mas5; PDBTitle: the crystal structure of hsp40 ydj1 Resolution 2.70 Å

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		86	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.							.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.									.	.	.	.	.	.	150	.
Predicted Secondary structure																								.	.	.	.	.	.																																					.	.	.	.	.	.	.	.
Query SS confidence																								.	.	.	.	.	.																																					.	.	.	.	.	.	.	.
Query Sequence		E	I	R	L	Q	I	I	P	Y	L	V	S	F	A	F	A	D	Y	S	R	S	A	.	.	.	.	.	.	A	S	K	A	R	C	E	H	C	S	G	T	G	F	Y	N	V	L	R	E	V	V	K	H	Y	R	R	G	E	S	V	I	K	E	E	W	.	.	.	.	.	.	.	.	V	K	E	L	C	Q	H	C
Query Conservation																								.	.	.	.	.	.																																					.	.	.	.	.	.	.	.
Alig confidence																								.	.	.	.	.	.																			.																		.	.	.	.	.	.	.	.
Template Conservation																																																.
Template Sequence		P	Q	R	G	K	D	I	K	H	E	I	S	A	S	L	E	E	L	Y	K	G	R	T	A	K	L	A	L	N	K	Q	I	L	C	K	E	C	E	G	R	G	G	K	K	G	A	.	V	K	K	C	T	S	C	N	G	Q	G	I	K	F	V	T	R	Q	M	G	P	M	I	Q	R	F	Q	T	E	C	D	V	C
Template Known Secondary structure				B												T	T																			T	T	T	T	T		S	B	S	T	T	T	.					T	T	S	S	S	S	S								S	S	S								S		T	T
Template Predicted Secondary structure																																																.
Template SS confidence
		110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.		.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.
		152	.	.	.	.	.	.	.	160				.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.
Predicted Secondary structure											.	.	.
Query SS confidence											.	.	.
Query Sequence		H	G	K	G	E	A	S	T	A	.	.	.	C	R	G	C	K	G	K	G	I	V	L	D	E	K	R	T	R	F	H	G	V	P	V	Y	K	I	C	G	R	C	N	G	N	R	F	S	R	L	P	T	T	L	A	R	R	H	V	Q	K	L	V	P	D	L	T	D	Y	Q	W	Y	K	G	Y	A	D	V	I	G
Query Conservation											.	.	.
Alig confidence											.	.	.																																																																				.
Template Conservation																																																																																	.
Template Sequence		H	G	T	G	D	I	I	D	P	K	D	R	C	K	S	C	N	G	K	K	V	E	N	E	R	K	I	L	E	V	H	V	E	P	G	M	K	D	G	Q	R	I	V	F	K	G	E	A	D	Q	A	P	D	V	I	P	G	D	V	V	F	I	V	S	E	R	P	H	K	S	F	K	R	D	G	D	D	L	V	.
Template Known Secondary structure		S	S	S	S	S				T	T	S	B		S	S	S	T	T	S															T	T			T	T						T	T		S				T	T		B														S	S					T	T				.
Template Predicted Secondary structure																																																																																	.
Template SS confidence
		189	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.
		229	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		K	L	V	T	K	C	W	Q	E	E	A	Y	A	E	A	Q	L	R
Query Conservation
Alig confidence		.	.	.	.	.
Template Conservation		.	.	.	.	.
Template Sequence		.	.	.	.	.	Y	E	A	E	I	D	L	L	T	A	I	A	G
Template Known Secondary structure		.	.	.	.	.
Template Predicted Secondary structure		.	.	.	.	.
Template SS confidence
							268	.	270	.	.	.	.	.	.	.	.	.	280

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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