Job Description P0AGJ2 Confidence 100.00% Date Thu Jan 5 11:29:18 GMT 2012 Rank 11 Aligned Residues 178 % Identity 16% Template c3ic6A_ PDB info PDB header:structural genomics, unknown function Chain: A: PDB Molecule:putative methylase family protein; PDBTitle: crystal structure of putative methylase family protein from neisseria2 gonorrhoeae Resolution 2.59 Å

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		13	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.																						.	60	.	.	.	.	.	.	.	.	.	70	.
Predicted Secondary structure																																																.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																																.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		L	A	R	R	Q	P	D	L	T	V	C	M	E	Q	V	H	K	P	H	N	V	S	A	I	I	R	T	A	D	A	V	G	V	H	E	V	H	A	V	W	P	G	S	R	M	R	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	T	M	A	S	A	A	A	G	S	N	S	W	V
Query Conservation																																																.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																																																.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		L	P	D	Y	L	G	N	I	R	I	I	L	T	R	T	S	H	P	A	N	I	G	S	A	A	R	A	X	K	T	X	G	L	H	R	L	T	I	V	T	P	N	L	X	A	T	P	X	T	E	N	P	P	V	F	N	P	D	D	V	Q	S	F	A	L	P	E	E	S	F	I	L	A	S	G	A	A	D	V	L
Template Known Secondary structure				G	G	G	G	G							S																	T	T								S						B	T	T	B	S	S						T	T		G	G	G												G	G	G
Template Predicted Secondary structure
Template SS confidence
		8	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.
			72	.	.	.	.	.	.	.	80	.	.	.	.	.	.									.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.
Predicted Secondary structure		.																.	.	.	.	.	.	.	.
Query SS confidence		.																.	.	.	.	.	.	.	.
Query Sequence		.	Q	V	K	T	H	R	T	I	G	D	A	V	A	H	L	.	.	.	.	.	.	.	.	K	G	Q	G	M	Q	I	L	A	T	H	L	S	D	N	A	V	D	F	R	E	I	D	Y	T	R	P	T	C	I	L	M	G	Q	E	K	T	G	I	T	Q	E	A	L	A	L	A	D	Q	D	I	I	I	P	M	I
Query Conservation		.																.	.	.	.	.	.	.	.
Alig confidence		.																.	.	.	.	.	.	.	.												.
Template Conservation																																					.
Template Sequence		H	N	A	E	I	V	A	T	L	D	E	A	L	A	D	T	T	I	A	C	A	L	T	S	R	R	R	T	A	P	L	Q	T	P	R	.	D	L	V	P	E	L	L	Q	A	A	N	R	G	E	K	V	A	L	V	F	G	N	E	T	F	G	L	S	I	E	E	V	R	A	C	N	R	L	X	T	I	N	G	N
Template Known Secondary structure			T					S							T	T										S							B				.												T	T									B	T	T	T	B								T		S
Template Predicted Secondary structure																																					.
Template SS confidence
		88	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.		.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.
		143	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		G	M	V	Q	S	L	N	V	S	V	A	S	A	L	I	L	Y	E	A	Q	R	Q	R	Q	N	A	G	M	Y	L	R	E	N	S	M	L	P	E	A	E	Q	Q	R	L	L	F	E	G	G	Y	P	V	L	A	K
Query Conservation
Alig confidence																															.	.	.	.												.	.
Template Conservation																															.	.	.	.												.	.
Template Sequence		P	D	Y	F	S	L	N	L	A	Q	A	V	Q	V	V	C	Y	E	I	F	S	Q	T	D	S	P	X	T	H	.	.	.	.	L	Q	Q	H	A	A	T	H	E	Q	I	.	.	K	G	X	L	A	H	X	E	S
Template Known Secondary structure		T	T																				T	T	T	S					.	.	.	.												.	.					T	T
Template Predicted Secondary structure																															.	.	.	.												.	.
Template SS confidence
		169	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.					.	.	200	.	.	.	.	.	.	.	.			.	210	.	.	.	.	.	.	.

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions