Job Description P0AGJ2 Confidence 100.00% Date Thu Jan 5 11:29:18 GMT 2012 Rank 5 Aligned Residues 156 % Identity 22% Template c2ha8A_ PDB info PDB header:rna binding protein Chain: A: PDB Molecule:tar (hiv-1) rna loop binding protein; PDBTitle: methyltransferase domain of human tar (hiv-1) rna binding2 protein 1 Resolution 1.60 Å

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		13	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.		.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.			.	.	80	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																																															.																					.	.
Query SS confidence																																															.																					.	.
Query Sequence		L	A	R	R	Q	P	D	L	T	V	C	M	E	Q	V	H	K	P	H	N	V	S	A	I	I	R	T	A	D	A	V	G	V	H	E	V	H	A	V	W	P	G	S	R	M	.	R	T	M	A	S	A	A	A	G	S	N	S	W	V	Q	V	K	T	H	R	.	.	T	I	G	D	A	V	A	H	L	K	G	Q
Query Conservation																																															.																					.	.
Alig confidence																																															.																					.	.
Template Conservation
Template Sequence		L	G	K	S	I	S	R	L	I	V	V	A	S	L	I	D	K	P	T	N	L	G	G	L	C	R	T	C	E	V	F	G	A	S	V	L	V	V	G	S	L	Q	C	I	S	D	K	Q	F	Q	H	L	S	V	S	A	E	Q	W	L	P	L	V	E	V	K	P	P	Q	L	I	D	Y	L	Q	Q	K	K	T	E
Template Known Secondary structure														T	T																	T	T		S					S		G	G	G	G	G	S								T	T	G	G	G	T	S							G	G	G											T
Template Predicted Secondary structure
Template SS confidence
		20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.
		90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		G	M	Q	I	L	A	T	H	L	S	D	N	A	V	D	F	R	E	I	D	Y	T	R	P	T	C	I	L	M	G	Q	E	K	T	G	I	T	Q	E	A	L	A	L	A	D	Q	D	I	I	I	P	M	I	G	M	V	Q	S	L	N	V	S	V	A	S	A	L	I	L	Y	E	A	Q	R	Q	R	Q	N	A
Query Conservation
Alig confidence
Template Conservation
Template Sequence		G	Y	T	I	I	G	V	E	Q	T	A	K	S	L	D	L	T	Q	Y	C	F	P	E	K	S	L	L	L	L	G	N	E	R	E	G	I	P	A	N	L	I	Q	Q	L	D	V	C	V	E	I	P	Q	Q	G	I	I	R	S	L	N	V	H	V	S	G	A	L	L	I	W	E	Y	T	R	Q	Q	L	L	S
Template Known Secondary structure		T										T	T				G	G	G					S	S							B	T	T	T	B	S						T	T		S									S	S	S	S																					T
Template Predicted Secondary structure
Template SS confidence
		100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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