Job Description P15006 Confidence 4.25% Date Thu Jan 5 11:34:09 GMT 2012 Rank 35 Aligned Residues 105 % Identity 9% Template c3rcwF_ PDB info PDB header:transcription Chain: F: PDB Molecule:bromodomain-containing protein 1; PDBTitle: crystal structure of the bromodomain of human brd1 Resolution 2.21 Å

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		103	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		T	L	A	N	R	I	I	K	S	T	L	A	I	L	I	K	H	E	K	L	N	S	T	I	R	D	E	A	R	S	L	Y	R	K	L	P	G	I	S	T	L	H	L	T	P	Q	H	F	S	Y	L	N	G	G	K	N	T	R	Y	Y	K	F	V	I	S	V	C	K	F	I	V	N	N	S	I	P	G	Q	N	K
Query Conservation
Alig confidence
Template Conservation
Template Sequence		T	P	L	T	V	L	L	R	S	V	L	D	Q	L	Q	D	K	D	P	A	R	I	F	A	Q	P	V	S	L	K	E	V	P	D	Y	L	D	H	I	K	H	P	M	D	F	A	T	M	R	K	R	L	E	A	Q	G	Y	K	N	L	H	E	F	E	E	D	F	D	L	I	I	D	N	C	M	K	Y	N	A	R
Template Known Secondary structure																	T	T		T	T		T	T	S	S				T	T	T		T	T						S	S													T	T			S	S																			S		T
Template Predicted Secondary structure
Template SS confidence
		565	.	.	.	.	570	.	.	.	.	.	.	.	.	.	580	.	.	.	.	.	.	.	.	.	590	.	.	.	.	.	.	.	.	.	600	.	.	.	.	.	.	.	.	.	610	.	.	.	.	.	.	.	.	.	620	.	.	.	.	.	.	.	.	.	630	.	.	.	.	.	.	.	.	.	640	.	.	.	.
		183	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.
Predicted Secondary structure
Query SS confidence
Query Sequence		G	H	Y	R	F	Y	D	F	E	R	N	E	K	E	M	S	L	L	Y	Q	K	F	L	Y	E	F	C	R	R
Query Conservation
Alig confidence												.	.	.	.
Template Conservation												.	.	.	.
Template Sequence		D	T	V	F	Y	R	A	A	V	R	.	.	.	.	L	R	D	Q	G	G	V	V	L	R	Q	A	R	R	E
Template Known Secondary structure		T	S									.	.	.	.
Template Predicted Secondary structure												.	.	.	.
Template SS confidence
		645	.	.	.	.	650	.	.	.	.					.	.	.	.	.	660	.	.	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions