 |
Job Description | P15006 | Confidence | 12.95% | Date | Thu Jan 5 11:34:09 GMT 2012 |
Rank | 21 | Aligned Residues | 51 |
% Identity | 22% | Template | c3h1tA_ |
PDB info |
PDB header:hydrolase | Chain: A: PDB Molecule:type i site-specific restriction-modification |
PDBTitle: the fragment structure of a putative hsdr subunit of a type2 i restriction enzyme from vibrio vulnificus yj016
|
Resolution | 2.30 Å |
|
 |
  |   |
242 | . | . | . | . | . | |
|
. | . | 250 | . | . | . | . | . | . | . | . | . | 260 | . | . | . | . | . | . | . | . | . | 270 | . | . | . | . | . | . | . | . | . | 280 | . | . | . | . | . | . | . | . | . | 290 | . | . | . | . | . | . | . | . | . | 300 | . | . | . | . | . | . | . | . | . | 310 |
Predicted Secondary structure |   |
|
|
|  |  |  | . | . |  |
|
|
|
|  |  |  |  |  |  |  |  |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|
|
|
|
|
|  |  |  |  |  |
|
|
|
|
|
|
|
|
Query SS confidence |   |
|
|
|
|
|
| . |
. |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Query Sequence |   |
E | T | D | I | T | I | . |
. |
R | S | S | E | K | I | L | I | V | D | A | K | Y | Y | K | S | I | F | S | R | R | M | G | T | E | K | F | H | S | Q | N | L | Y | Q | L | M | N | Y | L | W | S | L | K | P | E | N | G | E | N | I | G | G | L | L | I | Y | P | H | V | D | T | A | V |
Query Conservation |   |
  |
|
|
|
|
| . | . |   |   |   |   |   |   |
|
|
|
|
|
|
|
|   |   |   |   |   |   |   |   |   |   |   |   |
|   |   |   |
|
|
|
|
|   |
|
|   |   |   |   |   |   |   |   |   |   |   |   |   |
|   |
|
|
|
|   |   |   |   |   |   |
Alig confidence |   |
|
|
|
|
|
| . | . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . | . | . | . | . | . | . | . | . | . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . | . | . | . | . | . | . | . |
|
|
|
|
|
|
|
|
|
|
Template Conservation |   |
  |   |
|   |
|
|   |   |   |
|
|   |
|
|   |
|
|
|   |
|   |   |   |   |   |   |   |   | . | . | . | . | . | . | . | . | . | . |
|   |   |
|   |   |   |
|   |   |   |   |   |   |   | . | . | . | . | . | . | . | . |
|   |   |   |   |
|
|   |   |   |
Template Sequence |   |
R | A | D | Y | L | L | K | Y | T | R | D | F | P | I | A | V | V | E | A | K | P | E | N | S | P | V | G | Q | . |
. |
. |
. |
. |
. |
. |
. |
. |
. |
G | X | Q | Q | A | K | D | Y | A | E | I | L | G | L | K | . |
. |
. |
. |
. |
. |
. |
. |
F | A | Y | S | T | N | G | H | E | I |
Template Known Secondary structure |   |
 |  |  |  |  |  |  |  |  | T | T |  |  |  |  |  |  |  |  |
|
| T | T | S |
| G | G | G | . | . | . | . | . | . | . | . | . | . | S |  |  |  |  |  |  |  |  |  |  |  | T |
| S | . | . | . | . | . | . | . | . |  |  |  |  |  |
| S | S |
|  |
Template Predicted Secondary structure |   |
|
|  |  |  |  |  |
|
|
|
|  |  |  |  |  |  |  |  |
|
|
|
|
|
|  |  |  | . | . | . | . | . | . | . | . | . | . |  |  |  |  |  |  |  |  |  |  |  |
|
|
|
| . | . | . | . | . | . | . | . |  |  |  |  |  |
|
|
|  |  |
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
75 | . | . | . | . | 80 | . | . | . | . | . | . | . | . | . | 90 | . | . | . | . | . | . | . | . | . | 100 | . | . | |
|
|
|
|
|
|
|
|
|
. | . | . | . | . | . | . | 110 | . | . | . | . | . | . | . | |
|
|
|
|
|
|
|
. | . | 120 | . | . | . | . | . | . | . |
  |
No model constructed - rank, confidence too low
Phyre is for academic use only
Please cite: Protein structure prediction on
the web: a case study using the Phyre server |
Kelley LA and Sternberg MJE. Nature Protocols
4, 363 - 371 (2009) [pdf] [Import into BibTeX] |
  |
|
|