Secondary structure and disorder prediction

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Sequence		M	L	T	V	I	A	E	I	R	T	R	P	G	Q	H	H	R	Q	A	V	L	D	Q	F	A	K	I	V	P	T	V	L	K	E	E	G	C	H	G	Y	A	P	M	V	D	C	A	A	G	V	S	F	Q	S	M	A	P	D	S	I
Secondary structure
SS confidence
Disorder		?															?																															?	?	?	?	?	?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.
Sequence		V	M	I	E	Q	W	E	S	I	A	H	L	E	A	H	L	Q	T	P	H	M	K	A	Y	S	E	A	V	K	G	D	V	L	E	M	N	I	R	I	L	Q	P	G	I
Secondary structure
SS confidence
Disorder																																							?		?	?	?	?	?
Disorder confidence

Confidence Key
High(9)											Low (0)

?	Disordered
	Alpha helix
	Beta strand

Domain analysis

Hover over an aligned region to see model and summary info

Please note, only up to the top 20 hits are modelled to reduce computer load

Rank Aligned region

PDB 1tuv chain A Region: 1 - 103 Aligned: 103 Modelled: 103 Confidence: 100.0% Identity: 100% Fold: Ferredoxin-like Superfamily: Dimeric alpha+beta barrel Family: PA3566-like Phyre2 PDB 3mcs chain B Region: 2 - 103 Aligned: 92 Modelled: 102 Confidence: 100.0% Identity: 20% PDB header:oxidoreductase Chain: B: PDB Molecule:putative monooxygenase; PDBTitle: crystal structure of putative monooxygenase (fn1347) from2 fusobacterium nucleatum subsp. nucleatum atcc 25586 at 2.55 a3 resolution Phyre2 PDB 3f44 chain A Region: 2 - 104 Aligned: 93 Modelled: 101 Confidence: 99.9% Identity: 18% PDB header:oxidoreductase Chain: A: PDB Molecule:putative monooxygenase; PDBTitle: crystal structure of putative monooxygenase (yp_193413.1) from2 lactobacillus acidophilus ncfm at 1.55 a resolution Phyre2 PDB 3kkf chain A Region: 2 - 102 Aligned: 91 Modelled: 92 Confidence: 99.9% Identity: 18% PDB header:oxidoreductase Chain: A: PDB Molecule:putative antibiotic biosynthesis monooxygenase; PDBTitle: crystal structure of putative antibiotic biosynthesis2 monooxygenase (np_810307.1) from bacteriodes3 thetaiotaomicron vpi-5482 at 1.30 a resolution Phyre2 PDB 1x7v chain A Region: 1 - 102 Aligned: 92 Modelled: 102 Confidence: 99.9% Identity: 32% Fold: Ferredoxin-like Superfamily: Dimeric alpha+beta barrel Family: PA3566-like Phyre2 PDB 3bm7 chain A Region: 1 - 102 Aligned: 92 Modelled: 101 Confidence: 99.9% Identity: 21% PDB header:oxidoreductase Chain: A: PDB Molecule:protein of unknown function with ferredoxin-like fold; PDBTitle: crystal structure of a putative antibiotic biosynthesis monooxygenase2 (cc_2132) from caulobacter crescentus cb15 at 1.35 a resolution Phyre2 PDB 3e8o chain B Region: 1 - 101 Aligned: 91 Modelled: 92 Confidence: 99.9% Identity: 21% PDB header:oxidoreductase Chain: B: PDB Molecule:uncharacterized protein with erredoxin-like fold; PDBTitle: crystal structure of a putative antibiotic biosynthesis monooxygenase2 (dr_2100) from deinococcus radiodurans at 1.40 a resolution Phyre2 PDB 2pd1 chain A domain 1 Region: 2 - 102 Aligned: 89 Modelled: 91 Confidence: 99.9% Identity: 21% Fold: Ferredoxin-like Superfamily: Dimeric alpha+beta barrel Family: PA3566-like Phyre2 PDB 2bbe chain A Region: 1 - 104 Aligned: 94 Modelled: 104 Confidence: 99.9% Identity: 20% PDB header:structural genomics, unknown function Chain: A: PDB Molecule:hypothetical protein so0527; PDBTitle: crystal structure of protein so0527 from shewanella oneidensis Phyre2 PDB 2omo chain C Region: 2 - 102 Aligned: 91 Modelled: 101 Confidence: 99.9% Identity: 15% PDB header:oxidoreductase Chain: C: PDB Molecule:duf176; PDBTitle: putative antibiotic biosynthesis monooxygenase from nitrosomonas2 europaea Phyre2 PDB 2fb0 chain A Region: 2 - 94 Aligned: 83 Modelled: 92 Confidence: 99.9% Identity: 22% PDB header:structural genomics, unknown function Chain: A: PDB Molecule:conserved hypothetical protein; PDBTitle: crystal structure of conserved protein of unknown function from2 bacteroides thetaiotaomicron vpi-5482 at 2.10 a resolution, possible3 oxidoreductase Phyre2 PDB 2omo chain A domain 1 Region: 2 - 102 Aligned: 91 Modelled: 101 Confidence: 99.9% Identity: 15% Fold: Ferredoxin-like Superfamily: Dimeric alpha+beta barrel Family: PA3566-like Phyre2 PDB 3fgv chain B Region: 3 - 101 Aligned: 88 Modelled: 99 Confidence: 99.9% Identity: 20% PDB header:oxidoreductase Chain: B: PDB Molecule:uncharacterized protein with ferredoxin-like fold; PDBTitle: crystal structure of a putative antibiotic biosynthesis monooxygenase2 (spo2313) from silicibacter pomeroyi dss-3 at 1.30 a resolution Phyre2 PDB 1y0h chain A Region: 1 - 102 Aligned: 91 Modelled: 102 Confidence: 99.9% Identity: 26% Fold: Ferredoxin-like Superfamily: Dimeric alpha+beta barrel Family: PA3566-like Phyre2 PDB 1q8b chain A Region: 4 - 100 Aligned: 88 Modelled: 97 Confidence: 99.9% Identity: 17% Fold: Ferredoxin-like Superfamily: Dimeric alpha+beta barrel Family: Hypothetical protein YjcS Phyre2 PDB 2gff chain B Region: 3 - 102 Aligned: 90 Modelled: 100 Confidence: 99.9% Identity: 16% PDB header:sugar binding protein Chain: B: PDB Molecule:lsrg protein; PDBTitle: crystal structure of yersinia pestis lsrg Phyre2 PDB 3gz7 chain B Region: 2 - 101 Aligned: 90 Modelled: 100 Confidence: 99.9% Identity: 22% PDB header:biosynthetic protein Chain: B: PDB Molecule:putative antibiotic biosynthesis monooxygenase; PDBTitle: crystal structure of putative antibiotic biosynthesis2 monooxygenase (np_888398.1) from bordetella bronchiseptica3 at 2.15 a resolution Phyre2 PDB 1iuj chain A Region: 1 - 101 Aligned: 91 Modelled: 93 Confidence: 99.8% Identity: 18% Fold: Ferredoxin-like Superfamily: Dimeric alpha+beta barrel Family: PG130-like Phyre2 PDB 3kng chain A Region: 2 - 94 Aligned: 82 Modelled: 93 Confidence: 99.8% Identity: 15% PDB header:oxidoreductase Chain: A: PDB Molecule:snoab; PDBTitle: crystal structure of snoab, a cofactor-independent oxygenase2 from streptomyces nogalater, determined to 1.9 resolution Phyre2 PDB 3hx9 chain B Region: 2 - 101 Aligned: 90 Modelled: 92 Confidence: 99.8% Identity: 16% PDB header:oxidoreductase Chain: B: PDB Molecule:protein rv3592; PDBTitle: structure of heme-degrader, mhud (rv3592), from2 mycobacterium tuberculosis with two hemes bound in its3 active site Phyre2 1 d1tuva_ 2 c3mcsB_ 3 c3f44A_ 4 c3kkfA_ 5 d1x7va_ 6 c3bm7A_ 7 c3e8oB_ 8 d2pd1a1 9 c2bbeA_ 10 c2omoC_ 11 c2fb0A_ 12 d2omoa1 13 c3fgvB_ 14 d1y0ha_ 15 d1q8ba_ 16 c2gffB_ 17 c3gz7B_ 18 d1iuja_ 19 c3kngA_ 20 c3hx9B_ 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60

Detailed template information

# Template Alignment Coverage 3D Model Confidence % i.d. Template Information

1 d1tuva_ 100.0 100 Fold:Ferredoxin-like Superfamily:Dimeric alpha+beta barrel Family:PA3566-like 2 c3mcsB_ 100.0 20 PDB header:oxidoreductase Chain: B: PDB Molecule:putative monooxygenase; PDBTitle: crystal structure of putative monooxygenase (fn1347) from2 fusobacterium nucleatum subsp. nucleatum atcc 25586 at 2.55 a3 resolution 3 c3f44A_ 99.9 18 PDB header:oxidoreductase Chain: A: PDB Molecule:putative monooxygenase; PDBTitle: crystal structure of putative monooxygenase (yp_193413.1) from2 lactobacillus acidophilus ncfm at 1.55 a resolution 4 c3kkfA_ 99.9 18 PDB header:oxidoreductase Chain: A: PDB Molecule:putative antibiotic biosynthesis monooxygenase; PDBTitle: crystal structure of putative antibiotic biosynthesis2 monooxygenase (np_810307.1) from bacteriodes3 thetaiotaomicron vpi-5482 at 1.30 a resolution 5 d1x7va_ 99.9 32 Fold:Ferredoxin-like Superfamily:Dimeric alpha+beta barrel Family:PA3566-like 6 c3bm7A_ 99.9 21 PDB header:oxidoreductase Chain: A: PDB Molecule:protein of unknown function with ferredoxin-like fold; PDBTitle: crystal structure of a putative antibiotic biosynthesis monooxygenase2 (cc_2132) from caulobacter crescentus cb15 at 1.35 a resolution 7 c3e8oB_ 99.9 21 PDB header:oxidoreductase Chain: B: PDB Molecule:uncharacterized protein with erredoxin-like fold; PDBTitle: crystal structure of a putative antibiotic biosynthesis monooxygenase2 (dr_2100) from deinococcus radiodurans at 1.40 a resolution 8 d2pd1a1 99.9 21 Fold:Ferredoxin-like Superfamily:Dimeric alpha+beta barrel Family:PA3566-like 9 c2bbeA_ 99.9 20 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:hypothetical protein so0527; PDBTitle: crystal structure of protein so0527 from shewanella oneidensis 10 c2omoC_ 99.9 15 PDB header:oxidoreductase Chain: C: PDB Molecule:duf176; PDBTitle: putative antibiotic biosynthesis monooxygenase from nitrosomonas2 europaea 11 c2fb0A_ 99.9 22 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:conserved hypothetical protein; PDBTitle: crystal structure of conserved protein of unknown function from2 bacteroides thetaiotaomicron vpi-5482 at 2.10 a resolution, possible3 oxidoreductase 12 d2omoa1 99.9 15 Fold:Ferredoxin-like Superfamily:Dimeric alpha+beta barrel Family:PA3566-like 13 c3fgvB_ 99.9 20 PDB header:oxidoreductase Chain: B: PDB Molecule:uncharacterized protein with ferredoxin-like fold; PDBTitle: crystal structure of a putative antibiotic biosynthesis monooxygenase2 (spo2313) from silicibacter pomeroyi dss-3 at 1.30 a resolution 14 d1y0ha_ 99.9 26 Fold:Ferredoxin-like Superfamily:Dimeric alpha+beta barrel Family:PA3566-like 15 d1q8ba_ 99.9 17 Fold:Ferredoxin-like Superfamily:Dimeric alpha+beta barrel Family:Hypothetical protein YjcS 16 c2gffB_ 99.9 16 PDB header:sugar binding protein Chain: B: PDB Molecule:lsrg protein; PDBTitle: crystal structure of yersinia pestis lsrg 17 c3gz7B_ 99.9 22 PDB header:biosynthetic protein Chain: B: PDB Molecule:putative antibiotic biosynthesis monooxygenase; PDBTitle: crystal structure of putative antibiotic biosynthesis2 monooxygenase (np_888398.1) from bordetella bronchiseptica3 at 2.15 a resolution 18 d1iuja_ 99.8 18 Fold:Ferredoxin-like Superfamily:Dimeric alpha+beta barrel Family:PG130-like 19 c3kngA_ 99.8 15 PDB header:oxidoreductase Chain: A: PDB Molecule:snoab; PDBTitle: crystal structure of snoab, a cofactor-independent oxygenase2 from streptomyces nogalater, determined to 1.9 resolution 20 c3hx9B_ 99.8 16 PDB header:oxidoreductase Chain: B: PDB Molecule:protein rv3592; PDBTitle: structure of heme-degrader, mhud (rv3592), from2 mycobacterium tuberculosis with two hemes bound in its3 active site 21 d2zdpa1 not modelled 99.3 15 Fold:Ferredoxin-like Superfamily:Dimeric alpha+beta barrel Family:PG130-like 22 c2rilA_ not modelled 99.2 13 PDB header:oxidoreductase Chain: A: PDB Molecule:antibiotic biosynthesis monooxygenase; PDBTitle: crystal structure of a putative monooxygenase (yp_001095275.1) from2 shewanella loihica pv-4 at 1.26 a resolution 23 c3fj2A_ not modelled 98.9 13 PDB header:unknown function Chain: A: PDB Molecule:monooxygenase-like protein; PDBTitle: crystal structure of a monooxygenase-like protein (lin2316) from2 listeria innocua at 1.85 a resolution 24 d1xbwa_ not modelled 98.5 13 Fold:Ferredoxin-like Superfamily:Dimeric alpha+beta barrel Family:PG130-like 25 d1tz0a_ not modelled 98.5 18 Fold:Ferredoxin-like Superfamily:Dimeric alpha+beta barrel Family:PG130-like 26 d1lq9a_ not modelled 98.3 12 Fold:Ferredoxin-like Superfamily:Dimeric alpha+beta barrel Family:Actinorhodin biosynthesis monooxygenase ActVa-Orf6 27 d1tr0a_ not modelled 98.0 11 Fold:Ferredoxin-like Superfamily:Dimeric alpha+beta barrel Family:Plant stress-induced protein 28 c3hfkB_ not modelled 97.8 12 PDB header:isomerase Chain: B: PDB Molecule:4-methylmuconolactone methylisomerase; PDBTitle: crystal structure of 4-methylmuconolactone methylisomerase2 (h52a) in complex with 4-methylmuconolactone 29 c3bdeA_ not modelled 97.8 9 PDB header:unknown function Chain: A: PDB Molecule:mll5499 protein; PDBTitle: crystal structure of a dabb family protein with a ferredoxin-like fold2 (mll5499) from mesorhizobium loti maff303099 at 1.79 a resolution 30 c2qycA_ not modelled 97.7 9 PDB header:unknown function Chain: A: PDB Molecule:ferredoxin-like protein; PDBTitle: crystal structure of a dimeric ferredoxin-like protein (bb1511) from2 bordetella bronchiseptica rb50 at 1.90 a resolution 31 c3bn7A_ not modelled 97.7 7 PDB header:unknown function Chain: A: PDB Molecule:ferredoxin-like protein; PDBTitle: crystal structure of a dimeric ferredoxin-like protein (cc_2267) from2 caulobacter crescentus cb15 at 1.64 a resolution 32 c3bguA_ not modelled 97.3 12 PDB header:unknown function Chain: A: PDB Molecule:ferredoxin-like protein of unknown function; PDBTitle: crystal structure of a dimeric ferredoxin-like protein of unknown2 function (tfu_0763) from thermobifida fusca yx at 1.50 a resolution 33 d1rjja_ not modelled 97.3 10 Fold:Ferredoxin-like Superfamily:Dimeric alpha+beta barrel Family:Plant stress-induced protein 34 d1q4ra_ not modelled 97.3 9 Fold:Ferredoxin-like Superfamily:Dimeric alpha+beta barrel Family:Plant stress-induced protein 35 c3fmbA_ not modelled 96.9 8 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:dimeric protein of unknown function and ferredoxin-like PDBTitle: crystal structure of dimeric protein of unknown function and2 ferredoxin-like fold (yp_212648.1) from bacteroides fragilis nctc3 9343 at 1.85 a resolution 36 d1vqsa_ not modelled 96.9 15 Fold:Ferredoxin-like Superfamily:Dimeric alpha+beta barrel Family:NIPSNAP 37 d1vqya1 not modelled 96.9 14 Fold:Ferredoxin-like Superfamily:Dimeric alpha+beta barrel Family:NIPSNAP 38 c3bb5B_ not modelled 96.6 8 PDB header:unknown function Chain: B: PDB Molecule:stress responsive alpha-beta protein; PDBTitle: crystal structure of a dimeric ferredoxin-like protein of unknown2 function (jann_3925) from jannaschia sp. ccs1 at 2.30 a resolution 39 d1x8da1 not modelled 96.3 22 Fold:Ferredoxin-like Superfamily:Dimeric alpha+beta barrel Family:YiiL-like 40 c2qlwA_ not modelled 94.8 10 PDB header:isomerase Chain: A: PDB Molecule:rhau; PDBTitle: crystal structure of rhamnose mutarotase rhau of rhizobium2 leguminosarum 41 c2qlxA_ not modelled 94.8 10 PDB header:isomerase Chain: A: PDB Molecule:l-rhamnose mutarotase; PDBTitle: crystal structure of rhamnose mutarotase rhau of rhizobium2 leguminosarum in complex with l-rhamnose 42 d2ftra1 not modelled 93.3 15 Fold:Ferredoxin-like Superfamily:Dimeric alpha+beta barrel Family:EthD-like 43 d2go8a1 not modelled 87.4 14 Fold:Ferredoxin-like Superfamily:Dimeric alpha+beta barrel Family:PG130-like 44 c2jdjB_ not modelled 86.0 18 PDB header:biosynthetic protein Chain: B: PDB Molecule:redy-like protein; PDBTitle: crystal structure of hapk from hahella chejuensis 45 d2cb2a1 not modelled 85.2 21 Fold:Ferredoxin-like Superfamily:Dimeric alpha+beta barrel Family:SOR-like 46 d2ifxa1 not modelled 67.4 12 Fold:Ferredoxin-like Superfamily:Dimeric alpha+beta barrel Family:MmlI-like 47 d2hiqa1 not modelled 60.3 13 Fold:Ferredoxin-like Superfamily:Dimeric alpha+beta barrel Family:Hypothetical protein YdhR 48 c1wd6B_ not modelled 51.3 13 PDB header:structural genomics, unknown function Chain: B: PDB Molecule:protein ydhr; PDBTitle: crystal structure of jw1657 from escherichia coli 49 c3bf4B_ not modelled 45.8 12 PDB header:unknown function Chain: B: PDB Molecule:ethyl tert-butyl ether degradation ethd protein; PDBTitle: crystal structure of an ethd-like protein (reut_b5694) from ralstonia2 eutropha jmp134 at 2.10 a resolution 50 d2cs4a1 not modelled 43.1 20 Fold:beta-Grasp (ubiquitin-like) Superfamily:Ubiquitin-like Family:Ras-binding domain, RBD 51 c3dcaC_ not modelled 31.2 16 PDB header:structural genomics, unknown function Chain: C: PDB Molecule:rpa0582; PDBTitle: crystal structure of the rpa0582- protein of unknown2 function from rhodopseudomonas palustris- a structural3 genomics target 52 d2fiua1 not modelled 31.1 16 Fold:Ferredoxin-like Superfamily:Dimeric alpha+beta barrel Family:Atu0297-like 53 c2kl8A_ not modelled 21.6 21 PDB header:de novo protein Chain: A: PDB Molecule:or15; PDBTitle: solution nmr structure of de novo designed ferredoxin-like2 fold protein, northeast structural genomics consortium3 target or15 54 c3bpjD_ not modelled 13.6 8 PDB header:translation Chain: D: PDB Molecule:eukaryotic translation initiation factor 3 subunit j; PDBTitle: crystal structure of human translation initiation factor 3, subunit 12 alpha 55 c2k9hA_ not modelled 13.3 22 PDB header:metal binding protein Chain: A: PDB Molecule:glycoprotein; PDBTitle: the hantavirus glycoprotein g1 tail contains a dual cchc-2 type classical zinc fingers 56 c3gn6B_ not modelled 13.0 27 PDB header:structural genomics, unknown function Chain: B: PDB Molecule:ct0912, orfan protein with a ferredoxin-like domain repeat; PDBTitle: crystal structure of ct0912, orfan protein from chlorobium tepidum2 with a ferredoxin-like domain repeat (np_661805.1) from chlorobium3 tepidum tls at 1.80 a resolution 57 c2e1aD_ not modelled 8.7 15 PDB header:transcription Chain: D: PDB Molecule:75aa long hypothetical regulatory protein asnc; PDBTitle: crystal structure of ffrp-dm1 58 d1a8ya3 not modelled 8.1 7 Fold:Thioredoxin fold Superfamily:Thioredoxin-like Family:Calsequestrin 59 d1zr9a1 not modelled 7.9 12 Fold:beta-beta-alpha zinc fingers Superfamily:beta-beta-alpha zinc fingers Family:HkH motif-containing C2H2 finger 60 c1zr9A_ not modelled 7.9 12 PDB header:transcription Chain: A: PDB Molecule:zinc finger protein 593; PDBTitle: solution structure of a human c2h2-type zinc finger protein

Binding site prediction

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
If you use the binding site predictions from 3DLigandSite, please also cite:
3DLigandSite: predicting ligand-binding sites using similar structures.
Wass MN, Kelley LA and Sternberg MJ Nucleic Acids Research 38, W469-73 (2010) [PubMed]
© Structural Bioinformatics Group Imperial College London Lawrence Kelley, Benjamin Jefferys Disclaimer Terms and Conditions	Component software Template detection: HHpred 1.51 Secondary structure prediction: Psi-pred 2.5 Disorder prediction: Disopred 2.4 Transmembrane prediction: Memsat_SVM Multi-template modelling and ab initio: Poing 1.0