|   |
1 | . | . | . | . | . | . | . | . | 10 | . | . | . | . | . | . | . | . | . | 20 | . | . | . | . | . | . | . | . | . | 30 | . | . | . | . | . | . | . | . | . | 40 | . | . | . | . | . | . | . | . | . | 50 | . | . | . | . | . | . | . | . | . | 60 | . | . | . | . | . | . | . | . | . | 70 | . | . | . | . | . | . | . | . | . | 80 |
Predicted Secondary structure |   |
|  |  |  |  |  |  |  |  |  |
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|  |  |  |  |  |  |  |  |  |
|
|
|
|
|
|
|
|
|
|
|
|
|  |  |  |  |  |  |  |  |
|
|  |  |  |  |  |  |  |  |
|
|  |  |
Query SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Query Sequence |   |
M | L | T | V | I | A | E | I | R | T | R | P | G | Q | H | H | R | Q | A | V | L | D | Q | F | A | K | I | V | P | T | V | L | K | E | E | G | C | H | G | Y | A | P | M | V | D | C | A | A | G | V | S | F | Q | S | M | A | P | D | S | I | V | M | I | E | Q | W | E | S | I | A | H | L | E | A | H | L | Q | T | P | H |
Query Conservation |   |
|
|   |
|
|   |   |   |   |   |
|
|
|   |   |   |   |   |   |   |   |   |   |
|   |   |   |   |   |   |   |
|   |
|
|
|
|
|   |
|   |   |   |   |
|   |   |   |   |   |   |   |   |   |   |
|
|   |   |   |   |   |   |
|   |
|   |
|   |   |
|
|   |   |
|   |   |
|   |
|
Alig confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
| . | . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . | . | . | . | . | . | . | . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Template Conservation |   |
|
|   |
|
|   |   |   |   |
|   |
|
|   | . | . |   |   |   |   |   |   |   |
|   |   |   |   |   |   |   |   |   |
|
|
|   |
|   |   |   |   |   |   |   |   |   | . | . | . | . | . | . | . | . |   |
|   |   |   |   |   |   |
|   |
|   |   |   |   |
|   |   |
|
|   |   |
|
|   |
Template Sequence |   |
P | L | T | L | I | A | T | I | T | A | A | P | G | H | . |
. |
A | E | A | L | E | R | E | L | R | A | L | V | A | P | S | R | A | E | A | G | C | L | Q | Y | D | L | H | Q | D | R | H | . |
. |
. |
. |
. |
. |
. |
. |
D | S | H | L | F | Y | X | I | E | Q | W | R | D | D | A | A | L | E | R | H | Q | N | T | E | H |
Template Known Secondary structure |   |
|  |  |  |  |  |  |  |  |  |
| T | T |
| . | . |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | S | T | T |  |  |  |  |  |  |  |  |
| S | S | . | . | . | . | . | . | . | . |
| T | T |  |  |  |  |  |  |  |  | S | S |  |  |  |  |  |  |  |  | T | S |  |  |
Template Predicted Secondary structure |   |
|  |  |  |  |  |  |  |  |  |
|  |  |  | . | . |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|
|  |  |  |  |  |  |  |
|
|
| . | . | . | . | . | . | . | . |
|
|  |  |  |  |  |  |  |  |  |
|
|  |  |  |  |  |  |  |  |
|
|  |  |
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
4 | . | . | . | . | . | 10 | . | . | . | . | . | . | . | |
|
. | . | 20 | . | . | . | . | . | . | . | . | . | 30 | . | . | . | . | . | . | . | . | . | 40 | . | . | . | . | . | . | . | . | |
|
|
|
|
|
|
|
. | 50 | . | . | . | . | . | . | . | . | . | 60 | . | . | . | . | . | . | . | . | . | 70 | . | . | . |
  |
  |   |
81 | . | . | . | . | . | . | . | . | 90 | . | . | . | . | . | . | . | . | . | 100 | . | . |
Predicted Secondary structure |   |
 |  |  |  |  |  |  |  |  |  |  |  |
|
|
|  |  |  |  |  |  |
|
Query SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Query Sequence |   |
M | K | A | Y | S | E | A | V | K | G | D | V | L | E | M | N | I | R | I | L | Q | P |
Query Conservation |   |
  |   |   |   |   |   |   |   |   |   |
|
|   |   |   |   |
|   |   |
|   |
|
Alig confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Template Conservation |   |
  |   |   |   |   |   |   |   |   |   |
|   |   |   |   |   |
|   |   |   |   |   |
Template Sequence |   |
F | L | R | F | S | R | G | N | E | A | L | L | Q | N | V | K | I | D | Q | L | Y | R |
Template Known Secondary structure |   |
 |  |  |  |  | T | T |
| G | G | G |  |  |  |  |  |  |  |  |  |  |
|
Template Predicted Secondary structure |   |
 |  |  |  |  |  |  |  |  |  |  |
|
|
|
|  |  |  |  |  |  |  |
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
74 | . | . | . | . | . | 80 | . | . | . | . | . | . | . | . | . | 90 | . | . | . | . | . |
  |