Job Description P0AFW8 Confidence 4.02% Date Thu Jan 5 11:27:27 GMT 2012 Rank 70 Aligned Residues 53 % Identity 17% Template c3hfoC_ PDB info PDB header:rna binding protein Chain: C: PDB Molecule:ssr3341 protein; PDBTitle: crystal structure of an hfq protein from synechocystis sp. Resolution 1.30 Å

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		15	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.		.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.
Predicted Secondary structure																																										.
Query SS confidence																																										.
Query Sequence		N	L	E	L	A	C	Q	H	H	L	M	L	T	L	E	L	K	D	G	E	K	L	Q	A	K	A	S	D	L	V	S	R	K	N	V	E	Y	L	V	V	.	E	A	A	G	E	T	R	E	L	R	L	D	K	I	T	S	F
Query Conservation																																										.
Alig confidence																													.	.	.	.										.
Template Conservation																													.	.	.	.
Template Sequence		Q	V	Q	L	L	I	K	D	Q	T	P	V	E	I	K	L	L	T	G	D	S	L	F	G	T	I	R	.	.	.	.	W	Q	D	T	D	G	L	G	L	V	D	D	S	E	R	S	T	I	V	R	L	A	A	I	A	Y	I
Template Known Secondary structure									T	T								T	T	S									.	.	.	.				S	S							T	T	S							G	G	G
Template Predicted Secondary structure																													.	.	.	.
Template SS confidence
		13	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.					40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions