Job Description P37690 Confidence 90.79% Date Thu Jan 5 11:57:02 GMT 2012 Rank 62 Aligned Residues 212 % Identity 9% Template c3tnfB_ PDB info PDB header:protein transport Chain: B: PDB Molecule:lida; PDBTitle: lida from legionella in complex with active rab8a Resolution 2.50 Å

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		45	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	D	I	A	A	K	E	R	A	V	R	Q	K	Q	Q	Q	R	A	S	L	L	A	Q	L	K	K	Q	E	E	A	I	S	E	A	T	R	K	L	R	E	T	Q	N	T	L	N	Q	L	N	K	Q	I	D	E	M	N	A	S	I	A	K	L	E	Q	Q	K	A	A	Q	E	R	S	L	A	A	Q	L	D	A	A
Query Conservation
Alig confidence
Template Conservation
Template Sequence		D	E	Y	E	Q	A	I	K	R	A	Q	E	N	I	K	K	G	E	E	L	E	K	K	L	D	K	L	E	R	Q	G	K	D	L	E	D	K	Y	K	T	Y	E	E	N	L	E	G	F	E	K	L	L	T	D	S	E	E	L	S	L	S	E	I	N	E	K	M	E	A	F	S	K	D	S	E	K	L	T	Q	L
Template Known Secondary structure													T	T	T	T	T	T	T						T	T																						T	S					T	T
Template Predicted Secondary structure
Template SS confidence
		203	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.
		125	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		F	R	Q	G	E	H	T	G	I	Q	L	I	L	S	G	E	E	S	Q	R	G	Q	R	L	Q	A	Y	F	G	Y	L	N	Q	A	R	Q	E	T	I	A	Q	L	K	Q	T	R	E	E	V	A	M	Q	R	A	E	L	E	E	K	Q	S	E	Q	Q	T	L	L	Y	E	Q	R	A	Q	Q	A	K	L	T	Q	A
Query Conservation
Alig confidence
Template Conservation
Template Sequence		M	E	K	H	K	G	D	E	K	T	V	Q	S	L	Q	R	E	H	H	D	I	K	A	K	L	A	N	L	Q	V	L	H	D	A	H	T	G	K	K	S	Y	V	N	E	K	G	N	P	V	S	S	L	K	D	A	H	L	A	I	N	K	D	Q	E	V	V	E	H	E	G	Q	F	Y	L	L	Q	K	G	Q	W
Template Known Secondary structure			T	T	S	T	T																														S		S						T	T	S	S			S	S	G	G	G		S					T	T						S	T	T							T	T	T	T
Template Predicted Secondary structure
Template SS confidence
		283	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.
		205	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	N	E	R	K	K	T	L	A	G	L	E	S	S	I	Q	Q	G	Q	Q	Q	L	S	E	L	R	A	N	E	S	R	L	R	N	S	I	A	R	A	E	A	A	A	K	A	R	A	E	R	E	A	R
Query Conservation
Alig confidence
Template Conservation
Template Sequence		D	A	I	K	N	N	P	A	A	L	E	K	A	Q	K	D	Y	S	Q	S	K	H	D	L	A	T	I	K	M	E	A	L	I	H	K	L	S	L	E	M	E	K	Q	L	E	T	I	N	N	L	I	M
Template Known Secondary structure		T	T	T	T	T
Template Predicted Secondary structure
Template SS confidence
		363	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions